Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS27P8 Gene

Subcategory (RNA class) for RPS27P8 Gene

antisense

Aliases for RPS27P8 Gene

  • Ribosomal Protein S27 Pseudogene 8 2 3
  • RP11-175B9.3 5
  • RPS27_1_148 3

External Ids for RPS27P8 Gene

ORGUL Members for RPS27P8 Gene

Previous GeneCards Identifiers for RPS27P8 Gene

  • GC01U902339

Summaries for RPS27P8 Gene

GeneCards Summary for RPS27P8 Gene

RPS27P8 (Ribosomal Protein S27 Pseudogene 8) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for RPS27P8 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPS27P8

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS27P8 Gene

Genomics for RPS27P8 Gene

Regulatory Elements for RPS27P8 Gene

Enhancers for RPS27P8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G201709 2 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +758.8 758809 8.7 HDGF PKNOX1 SIN3A ZNF2 ZBTB7B ZNF143 ZNF548 FOS DEK SP3 IPO9 NAV1 IPO9-AS1 MIR1231 RPS27P8 ENSG00000236390 CSRP1 ENSG00000224536 PHLDA3 ENSG00000224818
GH01G202005 2 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +457.1 457104 18.8 MLX CREB3L1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D SSRP1 ZNF610 RNPEP ENSG00000273478 HNRNPA1P59 ENSG00000206637 RPL10P4 ELF3-AS1 RPS27P8 LMOD1 LOC100506672 ELF3
GH01G201550 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +919.0 919045 4.6 PKNOX1 ATF1 CREB3L1 ARNT ZNF121 ZNF766 ELK1 ZNF416 FOS SP3 RNPEP ENSG00000273478 IPO9 IPO9-AS1 DDX59 RPS27P8 ELF3-AS1 NAV1 LMOD1 GC01M201547
GH01G201635 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +833.5 833463 6.9 FOXA2 YBX1 ZBTB7B GATA2 ZNF207 FOS ZNF263 ZNF488 ZNF623 SREBF1 ENSG00000235121 RNPEP ENSG00000273478 ENSG00000224818 DDX59 NAV1 ENSG00000236390 RPS27P8 RNU6-501P ELF3-AS1
GH01G202157 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +310.0 310038 8.9 HDGF PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 SIN3A YBX1 ZBTB7B YY1 PTPN7 RNPEP CYB5R1 PTPRVP ENSG00000273478 RPS27P8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27P8 on UCSC Golden Path with GeneCards custom track

Promoters for RPS27P8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000018302 149 399

Genomic Location for RPS27P8 Gene

Chromosome:
1
Start:
202,471,806 bp from pter
End:
202,472,150 bp from pter
Size:
345 bases
Orientation:
Minus strand

Genomic View for RPS27P8 Gene

Genes around RPS27P8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P8 Gene

ORGUL Member Location for RPS27P8 Gene

ORGUL Member Location for RPS27P8 gene

Proteins for RPS27P8 Gene

Post-translational modifications for RPS27P8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P8 Gene

Domains & Families for RPS27P8 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P8 Gene

Function for RPS27P8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P8 Gene

Localization for RPS27P8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P8 Gene

Pathways & Interactions for RPS27P8 Gene

SuperPathways for RPS27P8 Gene

No Data Available

Interacting Proteins for RPS27P8 Gene

Gene Ontology (GO) - Biological Process for RPS27P8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P8 Gene

Drugs & Compounds for RPS27P8 Gene

No Compound Related Data Available

Transcripts for RPS27P8 Gene

fRNAdb Secondary structures for RPS27P8 Gene

  • FR232772

mRNA/cDNA for RPS27P8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P8 Gene

No ASD Table

Relevant External Links for RPS27P8 Gene

GeneLoc Exon Structure for
RPS27P8
ECgene alternative splicing isoforms for
RPS27P8

Expression for RPS27P8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27P8 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P8 Gene:

RPS27P8
genes like me logo Genes that share expression patterns with RPS27P8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P8 Gene

Orthologs for RPS27P8 Gene

Evolution for RPS27P8 Gene

ENSEMBL:
Gene Tree for RPS27P8 (if available)
TreeFam:
Gene Tree for RPS27P8 (if available)

No data available for Orthologs for RPS27P8 Gene

Paralogs for RPS27P8 Gene

No data available for Paralogs for RPS27P8 Gene

Variants for RPS27P8 Gene

Relevant External Links for RPS27P8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P8 Gene

Disorders for RPS27P8 Gene

No disorders were found for RPS27P8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS27P8 Gene

Publications for RPS27P8 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for RPS27P8 Gene

Sources for RPS27P8 Gene

Content
Loading form....