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Aliases for RPS27P8 Gene

Subcategory (RNA class) for RPS27P8 Gene

antisense

Aliases for RPS27P8 Gene

  • Ribosomal Protein S27 Pseudogene 8 2 3
  • RP11-175B9.3 5
  • RPS27_1_148 3

External Ids for RPS27P8 Gene

ORGUL Members for RPS27P8 Gene

Previous GeneCards Identifiers for RPS27P8 Gene

  • GC01U902339

Summaries for RPS27P8 Gene

GeneCards Summary for RPS27P8 Gene

RPS27P8 (Ribosomal Protein S27 Pseudogene 8) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for RPS27P8 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPS27P8

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS27P8 Gene

Genomics for RPS27P8 Gene

Regulatory Elements for RPS27P8 Gene

Enhancers for RPS27P8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F202926 1.1 ENCODE 21.7 -454.9 -454915 1.9 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZBED6 RNPEP SNRPE ENSG00000273478 PRELP HNRNPA1P59 RPS27P8 LOC100506672 LOC102723465 KLHL12
GH01F202531 1.2 Ensembl ENCODE 13.3 -60.6 -60602 3.5 PKNOX1 ATF1 ARNT ELK1 GATA2 ZNF207 FOS KLF13 JUNB NCOA1 PRELP RPS27P8 IPO9-AS1 IPO9 LGR6 GC01M202530 GC01P202549
GH01F202347 0.2 ENCODE 13.2 +123.1 123061 2.2 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 IPO9 IPO9-AS1 RPS27P8 ENSG00000224818 LGR6 PTPRVP PPP1R12B CYCSP4
GH01F202379 1 Ensembl ENCODE 13.2 +91.9 91857 1.6 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 FEZF1 ZNF2 RPS27P8 CYCSP4 GC01M202411 RNU6-89P
GH01F203270 0.2 ENCODE 13.1 -799.1 -799111 0.7 GTF2F1 ATF1 PKNOX1 USF1 SUZ12 ZMYM3 MAX ETS1 RFX5 YY1 PRELP RPS27P8 SNRPE ZBED6 CHIT1 GC01P203263
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS27P8 on UCSC Golden Path with GeneCards custom track

Promoters for RPS27P8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001753507 149 399

Genomic Location for RPS27P8 Gene

Chromosome:
1
Start:
202,471,806 bp from pter
End:
202,472,150 bp from pter
Size:
345 bases
Orientation:
Minus strand

Genomic View for RPS27P8 Gene

Genes around RPS27P8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P8 Gene

ORGUL Member Location for RPS27P8 Gene

ORGUL Member Location for RPS27P8 gene

Proteins for RPS27P8 Gene

Post-translational modifications for RPS27P8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P8 Gene

Domains & Families for RPS27P8 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P8 Gene

Function for RPS27P8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P8 Gene

Localization for RPS27P8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P8 Gene

Pathways & Interactions for RPS27P8 Gene

SuperPathways for RPS27P8 Gene

No Data Available

Interacting Proteins for RPS27P8 Gene

Gene Ontology (GO) - Biological Process for RPS27P8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P8 Gene

Transcripts for RPS27P8 Gene

fRNAdb Secondary structures for RPS27P8 Gene

  • FR232772

mRNA/cDNA for RPS27P8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P8 Gene

No ASD Table

Relevant External Links for RPS27P8 Gene

GeneLoc Exon Structure for
RPS27P8
ECgene alternative splicing isoforms for
RPS27P8

Expression for RPS27P8 Gene

mRNA expression in normal human tissues for RPS27P8 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P8 Gene:

RPS27P8
genes like me logo Genes that share expression patterns with RPS27P8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS27P8 Gene

Orthologs for RPS27P8 Gene

Evolution for RPS27P8 Gene

ENSEMBL:
Gene Tree for RPS27P8 (if available)
TreeFam:
Gene Tree for RPS27P8 (if available)

No data available for Orthologs for RPS27P8 Gene

Paralogs for RPS27P8 Gene

No data available for Paralogs for RPS27P8 Gene

Variants for RPS27P8 Gene

Relevant External Links for RPS27P8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P8 Gene

Disorders for RPS27P8 Gene

No disorders were found for RPS27P8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS27P8 Gene

Publications for RPS27P8 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for RPS27P8 Gene

Sources for RPS27P8 Gene

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