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Aliases for RPS27P4 Gene

Aliases for RPS27P4 Gene

  • Ribosomal Protein S27 Pseudogene 4 2 3
  • RPS27_5_366 3

External Ids for RPS27P4 Gene

Previous GeneCards Identifiers for RPS27P4 Gene

  • GC03U900778

Summaries for RPS27P4 Gene

GeneCards Summary for RPS27P4 Gene

RPS27P4 (Ribosomal Protein S27 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27P4 Gene

Genomics for RPS27P4 Gene

Regulatory Elements for RPS27P4 Gene

Enhancers for RPS27P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G040741 0.8 Ensembl ENCODE 0.4 -19.4 -19428 1.1 MXI1 RFX1 BMI1 ATF2 EP300 RPS27P4 GC03P040726
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27P4 on UCSC Golden Path with GeneCards custom track

Promoters for RPS27P4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000151195 89 399

Genomic Location for RPS27P4 Gene

Chromosome:
3
Start:
40,761,512 bp from pter
End:
40,761,856 bp from pter
Size:
345 bases
Orientation:
Plus strand

Genomic View for RPS27P4 Gene

Genes around RPS27P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P4 Gene

Proteins for RPS27P4 Gene

Post-translational modifications for RPS27P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P4 Gene

Domains & Families for RPS27P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P4 Gene

Function for RPS27P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P4 Gene

Localization for RPS27P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P4 Gene

Pathways & Interactions for RPS27P4 Gene

SuperPathways for RPS27P4 Gene

No Data Available

Interacting Proteins for RPS27P4 Gene

Gene Ontology (GO) - Biological Process for RPS27P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P4 Gene

Drugs & Compounds for RPS27P4 Gene

No Compound Related Data Available

Transcripts for RPS27P4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P4 Gene

No ASD Table

Relevant External Links for RPS27P4 Gene

GeneLoc Exon Structure for
RPS27P4
ECgene alternative splicing isoforms for
RPS27P4

Expression for RPS27P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P4 Gene:

RPS27P4
genes like me logo Genes that share expression patterns with RPS27P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P4 Gene

Orthologs for RPS27P4 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS27P4 Gene

Organism Taxonomy Gene Similarity Type Details
wheat
(Triticum aestivum)
Liliopsida Ta.17940 34
corn
(Zea mays)
Liliopsida Zm.432 34
Species where no ortholog for RPS27P4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for RPS27P4 Gene

Paralogs for RPS27P4 Gene

No data available for Paralogs for RPS27P4 Gene

Variants for RPS27P4 Gene

Relevant External Links for RPS27P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P4 Gene

Disorders for RPS27P4 Gene

Relevant External Links for RPS27P4

Genetic Association Database (GAD)
RPS27P4

No disorders were found for RPS27P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P4 Gene

Publications for RPS27P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. New sequence variants associated with bone mineral density. (PMID: 19079262) Styrkarsdottir U. … Stefansson K. (Nat. Genet. 2009) 46 64
  3. Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. (PMID: 19801982) Rivadeneira F. … Uitterlinden A.G. (Nat. Genet. 2009) 46 64
  4. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64

Products for RPS27P4 Gene

Sources for RPS27P4 Gene

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