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Aliases for RPS27P25 Gene

Subcategory (RNA class) for RPS27P25 Gene

lncRNA

Aliases for RPS27P25 Gene

  • Ribosomal Protein S27 Pseudogene 25 2 3 5
  • Ribosomal Protein S27-Like Pseudogene 3
  • RPS27_14_1288 3

External Ids for RPS27P25 Gene

ORGUL Members for RPS27P25 Gene

Previous GeneCards Identifiers for RPS27P25 Gene

  • GC12U901101
  • GC12P120809

Summaries for RPS27P25 Gene

GeneCards Summary for RPS27P25 Gene

RPS27P25 (Ribosomal Protein S27 Pseudogene 25) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27P25 Gene

Genomics for RPS27P25 Gene

Regulatory Elements for RPS27P25 Gene

Enhancers for RPS27P25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F120342 0.9 ENCODE 12.3 -27.1 -27130 0.6 ZNF362 NR2F1 THRB ZNF48 NR2F2 RARA POLR2A HNF4G NR2F6 HNF4A MSI1 RPS27P25 RNU6-1088P ENSG00000111780 TRIAP1 RPL31P52 SIRT4 COX6A1 PLA2G1B
GH12F120430 1.2 Ensembl ENCODE 11.9 +61.2 61161 0.4 ATF1 ARID4B SIN3A ZNF48 ZNF2 ZNF143 KLF7 KLF13 ZNF263 SP3 RPS27P25 MSI1 RPL31P52 PLA2G1B DYNLL1 SRSF9 RNU6-1088P SIRT4 PXN COX6A1
GH12F120476 0.7 Ensembl 10.8 +107.1 107061 0.2 SMARCA4 POLR2A NRF1 MAX MNT MYC RPL31P52 TRIAP1 ENSG00000111780 COX6A1 MSI1 RPS27P25 DYNLL1 NRAV
GH12F120479 0.2 ENCODE 10.8 +111.5 111480 2.8 HDAC1 PKNOX1 CBX3 TBL1XR1 TAL1 ZMYM3 ZNF175 GATA2 NCOR1 FOS GATC RPL31P52 TRIAP1 ENSG00000111780 COX6A1 COQ5 MSI1 RPS27P25 DYNLL1 NRAV
GH12F120301 0.2 ENCODE 10.4 -66.9 -66879 1.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 GCN1 SIRT4 RPL31P52 MIR4700 PXN PLA2G1B NME2P1 MSI1 RPS27P25 RNU4-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS27P25 on UCSC Golden Path with GeneCards custom track

Promoters for RPS27P25 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001781763 -540 1801 KLF17 ZIC2 ZFHX2 GLIS2 ZNF366 PATZ1 PRDM10 ZNF600 ZBTB20 EZH2

Genomic Location for RPS27P25 Gene

Chromosome:
12
Start:
120,369,440 bp from pter
End:
120,371,695 bp from pter
Size:
2,256 bases
Orientation:
Plus strand

Genomic View for RPS27P25 Gene

Genes around RPS27P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P25 Gene

Proteins for RPS27P25 Gene

Post-translational modifications for RPS27P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P25 Gene

Domains & Families for RPS27P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P25 Gene

Function for RPS27P25 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P25 Gene

Localization for RPS27P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P25 Gene

Pathways & Interactions for RPS27P25 Gene

SuperPathways for RPS27P25 Gene

No Data Available

Interacting Proteins for RPS27P25 Gene

Gene Ontology (GO) - Biological Process for RPS27P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P25 Gene

Transcripts for RPS27P25 Gene

mRNA/cDNA for RPS27P25 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P25 Gene

No ASD Table

Relevant External Links for RPS27P25 Gene

GeneLoc Exon Structure for
RPS27P25
ECgene alternative splicing isoforms for
RPS27P25

Expression for RPS27P25 Gene

mRNA expression in normal human tissues for RPS27P25 Gene

mRNA differential expression in normal tissues according to GTEx for RPS27P25 Gene

This gene is overexpressed in Pituitary (x7.7), Brain - Caudate (basal ganglia) (x5.2), and Brain - Amygdala (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of RPS27P25 Gene:

RPS27P25
genes like me logo Genes that share expression patterns with RPS27P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS27P25 Gene

Orthologs for RPS27P25 Gene

Evolution for RPS27P25 Gene

ENSEMBL:
Gene Tree for RPS27P25 (if available)
TreeFam:
Gene Tree for RPS27P25 (if available)

No data available for Orthologs for RPS27P25 Gene

Paralogs for RPS27P25 Gene

No data available for Paralogs for RPS27P25 Gene

Variants for RPS27P25 Gene

Relevant External Links for RPS27P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P25 Gene

Disorders for RPS27P25 Gene

No disorders were found for RPS27P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS27P25 Gene

Publications for RPS27P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS27P25 Gene

Sources for RPS27P25 Gene

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