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Aliases for RPS27P16 Gene

Subcategory (RNA class) for RPS27P16 Gene

lncRNA

Aliases for RPS27P16 Gene

  • Ribosomal Protein S27 Pseudogene 16 2 3 5
  • RPS27_9_801 3

External Ids for RPS27P16 Gene

ORGUL Members for RPS27P16 Gene

Previous GeneCards Identifiers for RPS27P16 Gene

  • GC07U902585
  • GC07P030208
  • GC07P030089

Summaries for RPS27P16 Gene

GeneCards Summary for RPS27P16 Gene

RPS27P16 (Ribosomal Protein S27 Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for RPS27P16 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPS27P16

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS27P16 Gene

Genomics for RPS27P16 Gene

Regulatory Elements for RPS27P16 Gene

Enhancers for RPS27P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G030161 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.2 -3248 5.4 PKNOX1 ARID4B FEZF1 YY1 TCF12 GATA2 FOS ZNF263 SP5 REST ZNRF2 MIR550A1 NOD1 MTURN LOC105375217 RPS27P16 ENSG00000251660
GH07G030168 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.4 3449 6.4 FOXA2 PKNOX1 ZFP64 INSM2 SIN3A FEZF1 RAD21 RARA FOS IKZF2 ZNRF2 MIR550A1 NOD1 MTURN LOC105375217 RPS27P16 GC07P030172
GH07G030158 1.3 Ensembl ENCODE dbSUPER 0.4 -7.9 -7918 2.0 SOX13 CTCF ESRRA KLF1 MAX ZNF48 RAD21 RARA CTBP1 EED MIR550A1 ZNRF2 NOD1 MTURN LOC105375217 ENSG00000251660 RPS27P16
GH07G030162 0.7 dbSUPER 0.4 -6.3 -6254 0.6 BMI1 ARID3A EED RELB IKZF2 MTA2 NR2F1 TRIM22 JUNB DPF2 MIR550A1 ZNRF2 NOD1 ENSG00000251660 RPS27P16
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS27P16 Gene

Chromosome:
7
Start:
30,167,804 bp from pter
End:
30,168,004 bp from pter
Size:
201 bases
Orientation:
Plus strand

Genomic View for RPS27P16 Gene

Genes around RPS27P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P16 Gene

ORGUL Member Location for RPS27P16 Gene

ORGUL Member Location for RPS27P16 gene

Proteins for RPS27P16 Gene

Post-translational modifications for RPS27P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P16 Gene

Domains & Families for RPS27P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P16 Gene

Function for RPS27P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P16 Gene

Localization for RPS27P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P16 Gene

Pathways & Interactions for RPS27P16 Gene

SuperPathways for RPS27P16 Gene

No Data Available

Interacting Proteins for RPS27P16 Gene

Gene Ontology (GO) - Biological Process for RPS27P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P16 Gene

Drugs & Compounds for RPS27P16 Gene

No Compound Related Data Available

Transcripts for RPS27P16 Gene

fRNAdb Secondary structures for RPS27P16 Gene

  • NONHSAG047250

mRNA/cDNA for RPS27P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P16 Gene

No ASD Table

Relevant External Links for RPS27P16 Gene

GeneLoc Exon Structure for
RPS27P16
ECgene alternative splicing isoforms for
RPS27P16

Expression for RPS27P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P16 Gene:

RPS27P16
genes like me logo Genes that share expression patterns with RPS27P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P16 Gene

Orthologs for RPS27P16 Gene

Evolution for RPS27P16 Gene

ENSEMBL:
Gene Tree for RPS27P16 (if available)
TreeFam:
Gene Tree for RPS27P16 (if available)

No data available for Orthologs for RPS27P16 Gene

Paralogs for RPS27P16 Gene

No data available for Paralogs for RPS27P16 Gene

Variants for RPS27P16 Gene

Relevant External Links for RPS27P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P16 Gene

Disorders for RPS27P16 Gene

Relevant External Links for RPS27P16

Genetic Association Database (GAD)
RPS27P16

No disorders were found for RPS27P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P16 Gene

Publications for RPS27P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  4. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for RPS27P16 Gene

Sources for RPS27P16 Gene

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