Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS27P1 Gene

Subcategory (RNA class) for RPS27P1 Gene

lncRNA

Aliases for RPS27P1 Gene

  • Ribosomal Protein S27 Pseudogene 1 2 3 5
  • RPS27_10_1079 3
  • BA108M11.3 3

External Ids for RPS27P1 Gene

ORGUL Members for RPS27P1 Gene

Previous GeneCards Identifiers for RPS27P1 Gene

  • GC10U900521
  • GC10P093294
  • GC10P086933

Summaries for RPS27P1 Gene

GeneCards Summary for RPS27P1 Gene

RPS27P1 (Ribosomal Protein S27 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27P1 Gene

Genomics for RPS27P1 Gene

Regulatory Elements for RPS27P1 Gene

Enhancers for RPS27P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G091541 0.8 FANTOM5 ENCODE 0.7 -3.1 -3092 1.1 STAT1 SCRT2 SMC3 MAX TCF7L2 FOXA1 PPP1R3C RPS27P1 ENSG00000271385
GH10G091540 0.7 FANTOM5 0.7 -4.0 -4019 0.3 GTF2F1 MAX RAD21 RFX5 SCRT2 SMC3 RCOR1 FOS NFE2L2 CHD2 PPP1R3C RPS27P1 ENSG00000271385
GH10G091552 1 Ensembl ENCODE 0.4 +7.6 7555 1.4 CTCF ARNT ZSCAN4 MAX RAD21 GATA3 SMC3 ZNF143 GATAD2A ZNF654 PPP1R3C LOC105378433 RPS27P1
GH10G091511 1 Ensembl ENCODE 0.3 -32.6 -32629 1.6 SUZ12 JUN ZSCAN4 FOSL1 ZNF664 ZNF316 POLR2A FOS NFE2 MAFK RPS27P1 ENSG00000271385
GH10G091519 0.9 Ensembl ENCODE 0.3 -24.3 -24297 1.2 HLF RBBP5 CHD7 NR2F2 JUND POLR2A HDAC2 EZH2 HECTD2 PPP1R3C RPS27P1 ENSG00000271385
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS27P1 Gene

Chromosome:
10
Start:
91,544,852 bp from pter
End:
91,545,098 bp from pter
Size:
247 bases
Orientation:
Plus strand

Genomic View for RPS27P1 Gene

Genes around RPS27P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P1 Gene

Proteins for RPS27P1 Gene

Post-translational modifications for RPS27P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P1 Gene

Domains & Families for RPS27P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P1 Gene

Function for RPS27P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P1 Gene

Localization for RPS27P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27P1 Gene

Pathways & Interactions for RPS27P1 Gene

SuperPathways for RPS27P1 Gene

No Data Available

Interacting Proteins for RPS27P1 Gene

Gene Ontology (GO) - Biological Process for RPS27P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P1 Gene

Drugs & Compounds for RPS27P1 Gene

No Compound Related Data Available

Transcripts for RPS27P1 Gene

mRNA/cDNA for RPS27P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P1 Gene

No ASD Table

Relevant External Links for RPS27P1 Gene

GeneLoc Exon Structure for
RPS27P1
ECgene alternative splicing isoforms for
RPS27P1

Expression for RPS27P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P1 Gene:

RPS27P1
genes like me logo Genes that share expression patterns with RPS27P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P1 Gene

Orthologs for RPS27P1 Gene

Evolution for RPS27P1 Gene

ENSEMBL:
Gene Tree for RPS27P1 (if available)
TreeFam:
Gene Tree for RPS27P1 (if available)

No data available for Orthologs for RPS27P1 Gene

Paralogs for RPS27P1 Gene

No data available for Paralogs for RPS27P1 Gene

Variants for RPS27P1 Gene

Relevant External Links for RPS27P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P1 Gene

Disorders for RPS27P1 Gene

Relevant External Links for RPS27P1

Genetic Association Database (GAD)
RPS27P1

No disorders were found for RPS27P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P1 Gene

Publications for RPS27P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide meta-analyses identify multiple loci associated with smoking behavior. (PMID: 20418890) (Nat. Genet. 2010) 46 64
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64

Products for RPS27P1 Gene

Sources for RPS27P1 Gene

Content
Loading form....