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Aliases for RPS27AP13 Gene

Subcategory (RNA class) for RPS27AP13 Gene

antisense

Aliases for RPS27AP13 Gene

  • Ribosomal Protein S27a Pseudogene 13 2 3 5
  • RPS27A_4_904 3

External Ids for RPS27AP13 Gene

ORGUL Members for RPS27AP13 Gene

Previous GeneCards Identifiers for RPS27AP13 Gene

  • GC08M054963
  • GC08M054800

Summaries for RPS27AP13 Gene

GeneCards Summary for RPS27AP13 Gene

RPS27AP13 (Ribosomal Protein S27a Pseudogene 13) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27AP13 Gene

Genomics for RPS27AP13 Gene

Regulatory Elements for RPS27AP13 Gene

Enhancers for RPS27AP13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F053879 1.6 FANTOM5 Ensembl ENCODE 0.8 +4.0 4007 8.3 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 FOS ZNF263 SP3 LOC100131254 RPS27AP13 ENSG00000272457
GH08F053877 1.1 Ensembl ENCODE 0.4 +9.8 9771 1.1 HDAC1 CBX3 ARID4B ZNF48 ZSCAN9 DNMT3B RARA ZNF143 KLF11 MIER1 ENSG00000272457 RPS27AP13
GH08F053904 0.9 Ensembl ENCODE 0.3 -18.4 -18389 3.0 WRNIP1 JUNB FEZF1 TSHZ1 ZEB2 RAD21 ZNF843 EP300 OSR2 JUND ATP6V1H GC08P053915 RPS27AP13
GH08F053880 0.5 ENCODE 0.4 +8.3 8269 0.0 SUZ12 CBX2 EZH2 ENSG00000272457 RPS27AP13
GH08F053876 0.5 ENCODE 0.4 +10.7 10722 0.1 RNF2 CBX2 EZH2 ENSG00000272457 RPS27AP13
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27AP13 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS27AP13 Gene

Chromosome:
8
Start:
53,887,008 bp from pter
End:
53,887,479 bp from pter
Size:
472 bases
Orientation:
Minus strand

Genomic View for RPS27AP13 Gene

Genes around RPS27AP13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27AP13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27AP13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27AP13 Gene

Proteins for RPS27AP13 Gene

Post-translational modifications for RPS27AP13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27AP13 Gene

Domains & Families for RPS27AP13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27AP13 Gene

Function for RPS27AP13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27AP13 Gene

Localization for RPS27AP13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS27AP13 Gene

Pathways & Interactions for RPS27AP13 Gene

SuperPathways for RPS27AP13 Gene

No Data Available

Interacting Proteins for RPS27AP13 Gene

Gene Ontology (GO) - Biological Process for RPS27AP13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27AP13 Gene

Transcripts for RPS27AP13 Gene

mRNA/cDNA for RPS27AP13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27AP13 Gene

No ASD Table

Relevant External Links for RPS27AP13 Gene

GeneLoc Exon Structure for
RPS27AP13
ECgene alternative splicing isoforms for
RPS27AP13

Expression for RPS27AP13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS27AP13 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27AP13 Gene:

RPS27AP13
genes like me logo Genes that share expression patterns with RPS27AP13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS27AP13 Gene

Orthologs for RPS27AP13 Gene

Evolution for RPS27AP13 Gene

ENSEMBL:
Gene Tree for RPS27AP13 (if available)
TreeFam:
Gene Tree for RPS27AP13 (if available)

No data available for Orthologs for RPS27AP13 Gene

Paralogs for RPS27AP13 Gene

No data available for Paralogs for RPS27AP13 Gene

Variants for RPS27AP13 Gene

Relevant External Links for RPS27AP13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27AP13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27AP13 Gene

Disorders for RPS27AP13 Gene

No disorders were found for RPS27AP13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS27AP13 Gene

Publications for RPS27AP13 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS27AP13 Gene

Sources for RPS27AP13 Gene

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