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Aliases for RPS27AP11 Gene

Aliases for RPS27AP11 Gene

  • Ribosomal Protein S27a Pseudogene 11 2 3 5
  • RPS27A_4_740 3

External Ids for RPS27AP11 Gene

Previous GeneCards Identifiers for RPS27AP11 Gene

  • GC06P114012
  • GC06P113903

Summaries for RPS27AP11 Gene

GeneCards Summary for RPS27AP11 Gene

RPS27AP11 (Ribosomal Protein S27a Pseudogene 11) is a Pseudogene.

Additional gene information for RPS27AP11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27AP11 Gene

Genomics for RPS27AP11 Gene

Regulatory Elements for RPS27AP11 Gene

Enhancers for RPS27AP11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H113968 1.4 ENCODE dbSUPER 26.3 +389.1 389129 3 HDGF MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 RPS27AP11 HDAC2 ENSG00000231912 ENSG00000232395 ENSG00000223811 ENSG00000226079 SOCS5P5 FLJ34503 HDAC2-AS2
GH06H113854 2.8 FANTOM5 ENCODE dbSUPER 10.5 +276.4 276358 7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 FLJ34503 RPS27AP11 HDAC2 MARCKS GC06P113861
GH06H114341 1.2 ENCODE dbSUPER 12.2 +761.2 761236 3 ARID4B KLF17 FEZF1 GLI4 RAD21 ZNF2 RARA GLIS2 ZNF366 THAP11 HDAC2 RPS27AP11 HS3ST5 RNA5SP213 GC06M114221
GH06H113564 1.4 FANTOM5 Ensembl ENCODE 0.4 -16.2 -16234 2 ELF3 FOXA2 RAD21 RARA YY1 ETS1 CREM MIXL1 MIER2 PPARG LINC02541 MARCKS PIR61489 GC06P113558 RPS27AP11
GH06H113558 0.9 Ensembl ENCODE 0.3 -21.3 -21265 3 JUN NR2F2 ZNF7 JUND GATA3 POLR2A PRDM10 FOS PIR61489 GC06P113558 RPS27AP11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS27AP11 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS27AP11 Gene

Chromosome:
6
Start:
113,581,463 bp from pter
End:
113,581,999 bp from pter
Size:
537 bases
Orientation:
Plus strand

Genomic View for RPS27AP11 Gene

Genes around RPS27AP11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27AP11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27AP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27AP11 Gene

Proteins for RPS27AP11 Gene

Post-translational modifications for RPS27AP11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27AP11 Gene

Domains & Families for RPS27AP11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27AP11 Gene

Function for RPS27AP11 Gene

Phenotypes From GWAS Catalog for RPS27AP11 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS27AP11
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27AP11 Gene

Localization for RPS27AP11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27AP11 Gene

Pathways & Interactions for RPS27AP11 Gene

SuperPathways for RPS27AP11 Gene

No Data Available

Interacting Proteins for RPS27AP11 Gene

Gene Ontology (GO) - Biological Process for RPS27AP11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27AP11 Gene

Drugs & Compounds for RPS27AP11 Gene

No Compound Related Data Available

Transcripts for RPS27AP11 Gene

mRNA/cDNA for RPS27AP11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS27AP11
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27AP11 Gene

No ASD Table

Relevant External Links for RPS27AP11 Gene

GeneLoc Exon Structure for
RPS27AP11
ECgene alternative splicing isoforms for
RPS27AP11

Expression for RPS27AP11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27AP11 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27AP11 Gene:

RPS27AP11
genes like me logo Genes that share expression patterns with RPS27AP11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27AP11 Gene

Orthologs for RPS27AP11 Gene

Evolution for RPS27AP11 Gene

ENSEMBL:
Gene Tree for RPS27AP11 (if available)
TreeFam:
Gene Tree for RPS27AP11 (if available)

No data available for Orthologs for RPS27AP11 Gene

Paralogs for RPS27AP11 Gene

No data available for Paralogs for RPS27AP11 Gene

Variants for RPS27AP11 Gene

Relevant External Links for RPS27AP11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27AP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27AP11 Gene

Disorders for RPS27AP11 Gene

Relevant External Links for RPS27AP11

Genetic Association Database (GAD)
RPS27AP11

No disorders were found for RPS27AP11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27AP11 Gene

Publications for RPS27AP11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 45 60

Products for RPS27AP11 Gene

Sources for RPS27AP11 Gene

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