Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS25P3 Gene

Subcategory (RNA class) for RPS25P3 Gene

lncRNA

Aliases for RPS25P3 Gene

  • Ribosomal Protein S25 Pseudogene 3 2 3
  • RPS25_1_198 3
  • AC012065.5 5

External Ids for RPS25P3 Gene

ORGUL Members for RPS25P3 Gene

Previous GeneCards Identifiers for RPS25P3 Gene

  • GC02U901646
  • GC02M020808

Summaries for RPS25P3 Gene

GeneCards Summary for RPS25P3 Gene

RPS25P3 (Ribosomal Protein S25 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS25P3 Gene

Genomics for RPS25P3 Gene

Regulatory Elements for RPS25P3 Gene

Enhancers for RPS25P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F020608 1.7 FANTOM5 Ensembl ENCODE 0.8 -3.9 -3923 3.6 MLX ARID4B DMAP1 ZNF48 YY1 ZNF143 FOS ZNF263 SP5 ZHX2 LAPTM4A HS1BP3 SDC1 ENSG00000269976 RPS25P3 GC02M020612
GH02F020604 0.9 Ensembl ENCODE 0.8 +1.6 1629 1.3 JUND NFE2 NFE2L2 RHOB ENSG00000228950 GDF7 RPS25P3 HS1BP3-IT1
GH02F020601 0.6 ENCODE 0.4 +5.3 5276 0.5 BCOR SMARCA5 NFRKB ZNF175 POLR2H ZFHX2 POLR2A EGR2 ENSG00000228950 RHOB GDF7 RPS25P3 HS1BP3-IT1
GH02F020589 1.4 FANTOM5 Ensembl ENCODE 0.4 +11.7 11651 11.6 HDGF PKNOX1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 CBX5 ZNF207 RHOB GDF7 ENSG00000228950 APOB ENSG00000269976 HS1BP3 HS1BP3-IT1 RPS25P3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS25P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS25P3 Gene

Chromosome:
2
Start:
20,606,280 bp from pter
End:
20,606,654 bp from pter
Size:
375 bases
Orientation:
Minus strand

Genomic View for RPS25P3 Gene

Genes around RPS25P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS25P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS25P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS25P3 Gene

Proteins for RPS25P3 Gene

Post-translational modifications for RPS25P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS25P3 Gene

Domains & Families for RPS25P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS25P3 Gene

Function for RPS25P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS25P3 Gene

Localization for RPS25P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS25P3 Gene

Pathways & Interactions for RPS25P3 Gene

SuperPathways for RPS25P3 Gene

No Data Available

Interacting Proteins for RPS25P3 Gene

Gene Ontology (GO) - Biological Process for RPS25P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS25P3 Gene

Transcripts for RPS25P3 Gene

mRNA/cDNA for RPS25P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS25P3 Gene

No ASD Table

Relevant External Links for RPS25P3 Gene

GeneLoc Exon Structure for
RPS25P3
ECgene alternative splicing isoforms for
RPS25P3

Expression for RPS25P3 Gene

mRNA expression in normal human tissues for RPS25P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS25P3 Gene:

RPS25P3
genes like me logo Genes that share expression patterns with RPS25P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS25P3 Gene

Orthologs for RPS25P3 Gene

Evolution for RPS25P3 Gene

ENSEMBL:
Gene Tree for RPS25P3 (if available)
TreeFam:
Gene Tree for RPS25P3 (if available)

No data available for Orthologs for RPS25P3 Gene

Paralogs for RPS25P3 Gene

No data available for Paralogs for RPS25P3 Gene

Variants for RPS25P3 Gene

Relevant External Links for RPS25P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS25P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS25P3 Gene

Disorders for RPS25P3 Gene

No disorders were found for RPS25P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS25P3 Gene

Publications for RPS25P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS25P3 Gene

Sources for RPS25P3 Gene

Content
Loading form....