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Aliases for RPS21P6 Gene

Subcategory (RNA class) for RPS21P6 Gene

antisense

Aliases for RPS21P6 Gene

  • Ribosomal Protein S21 Pseudogene 6 2 3
  • RP11-742D12.1 5
  • RPS21_3_1599 3

External Ids for RPS21P6 Gene

ORGUL Members for RPS21P6 Gene

Previous GeneCards Identifiers for RPS21P6 Gene

  • GC18U900484
  • GC18P044303

Summaries for RPS21P6 Gene

GeneCards Summary for RPS21P6 Gene

RPS21P6 (Ribosomal Protein S21 Pseudogene 6) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for RPS21P6 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPS21P6

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS21P6 Gene

Genomics for RPS21P6 Gene

Regulatory Elements for RPS21P6 Gene

Enhancers for RPS21P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G046718 1.1 Ensembl ENCODE dbSUPER 0.7 -4.1 -4094 1.6 JUND GATA2 ZNF366 JUN U2AF1 FOS U2AF2 ST8SIA5 RPS21P6 LOC105372096
GH18G046710 1.1 ENCODE dbSUPER 0.4 -11.0 -11007 2.7 HDAC1 PKNOX1 ATF1 TBL1XR1 TCF12 GATA2 ZNF366 CREM MEF2D NFIC ST8SIA5 PIAS2 RPS21P6 LOC105372096
GH18G046707 0.8 ENCODE dbSUPER 0.4 -15.8 -15833 0.2 ESRRA JUND FOS RARA RPS21P6 LOC105372096
GH18G046754 1 Ensembl ENCODE 0.3 +33.4 33388 3.9 CTCF KLF1 SUZ12 ZNF704 ZNF76 ZFHX2 POLR2A ZBTB48 PATZ1 EZH2 LOC105372097 PIAS2 HDHD2 IER3IP1 RPS21P6
GH18G046675 0.9 ENCODE dbSUPER 0.2 -46.3 -46327 3.2 ZNF263 CTCF ZNF792 JUN CEBPB FEZF1 RAD21 ZFHX2 ZNF26 FOXP2 HAUS1 ST8SIA5 LOC105372096 RPS21P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS21P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS21P6 Gene

Chromosome:
18
Start:
46,722,975 bp from pter
End:
46,723,223 bp from pter
Size:
249 bases
Orientation:
Plus strand

Genomic View for RPS21P6 Gene

Genes around RPS21P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS21P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS21P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS21P6 Gene

ORGUL Member Location for RPS21P6 Gene

ORGUL Member Location for RPS21P6 gene

Proteins for RPS21P6 Gene

Post-translational modifications for RPS21P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS21P6 Gene

Domains & Families for RPS21P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS21P6 Gene

Function for RPS21P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS21P6 Gene

Localization for RPS21P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS21P6 Gene

Pathways & Interactions for RPS21P6 Gene

SuperPathways for RPS21P6 Gene

No Data Available

Interacting Proteins for RPS21P6 Gene

Gene Ontology (GO) - Biological Process for RPS21P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS21P6 Gene

Drugs & Compounds for RPS21P6 Gene

No Compound Related Data Available

Transcripts for RPS21P6 Gene

fRNAdb Secondary structures for RPS21P6 Gene

  • FR137454

mRNA/cDNA for RPS21P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS21P6 Gene

No ASD Table

Relevant External Links for RPS21P6 Gene

GeneLoc Exon Structure for
RPS21P6
ECgene alternative splicing isoforms for
RPS21P6

Expression for RPS21P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS21P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS21P6 Gene:

RPS21P6
genes like me logo Genes that share expression patterns with RPS21P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS21P6 Gene

Orthologs for RPS21P6 Gene

Evolution for RPS21P6 Gene

ENSEMBL:
Gene Tree for RPS21P6 (if available)
TreeFam:
Gene Tree for RPS21P6 (if available)

No data available for Orthologs for RPS21P6 Gene

Paralogs for RPS21P6 Gene

No data available for Paralogs for RPS21P6 Gene

Variants for RPS21P6 Gene

Relevant External Links for RPS21P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS21P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS21P6 Gene

Disorders for RPS21P6 Gene

No disorders were found for RPS21P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS21P6 Gene

Publications for RPS21P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for RPS21P6 Gene

Sources for RPS21P6 Gene

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