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Aliases for RPS21P3 Gene

Aliases for RPS21P3 Gene

  • Ribosomal Protein S21 Pseudogene 3 2 3
  • RP11-109G23.1 5
  • RPS21_2_494 3

External Ids for RPS21P3 Gene

Previous GeneCards Identifiers for RPS21P3 Gene

  • GC04P079909
  • GC04P079690

Summaries for RPS21P3 Gene

GeneCards Summary for RPS21P3 Gene

RPS21P3 (Ribosomal Protein S21 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS21P3 Gene

Genomics for RPS21P3 Gene

Regulatory Elements for RPS21P3 Gene

Enhancers for RPS21P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F078691 1.7 FANTOM5 Ensembl ENCODE 11.6 -75.4 -75402 4.1 HDGF PKNOX1 ARNT CREB3L1 CBX5 FOS KLF13 JUNB REST SMARCB1 BMP2K LINC00989 SERBP1P5 OR7E94P ENSG00000200998 RPS21P3 GC04P078707 HIGD1AP13
GH04F078621 1.6 FANTOM5 Ensembl ENCODE 11.4 -141.8 -141762 10.5 PKNOX1 ATF1 ARNT YBX1 GATA2 FOS JUNB NCOA1 REST TBX21 BMP2K RPS21P3 LINC01094 LINC01088 ENSG00000200998 GC04M078633 ANXA3
GH04F078616 1.4 FANTOM5 Ensembl ENCODE 11.7 -152.0 -152031 0.8 HDAC1 PKNOX1 ATF1 ZBTB40 CHAMP1 CREM CREB3 MEF2D TFDP1 POLR2H BMP2K RPS21P3 ENSG00000200998 GC04M078633 ANXA3
GH04F078704 1.2 Ensembl ENCODE 12 -63.1 -63103 2.3 ZFP64 ZNF493 ZEB1 ZNF121 ZNF138 ZNF354C FOS ZNF202 ZNF654 ZNF680 CNOT6L BMP2K SERBP1P5 RPS21P3 ENSG00000200998 LINC01094 GC04P078707 HIGD1AP13
GH04F078644 1.2 FANTOM5 ENCODE 11.7 -122.6 -122596 2.7 TBP HDAC1 ATF1 CREB3L1 NFRKB SIN3A RAD21 RFX5 ZNF143 RCOR1 BMP2K RPS21P3 LINC01094 ENSG00000200998 GC04M078633
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS21P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS21P3 Gene

Chromosome:
4
Start:
78,768,449 bp from pter
End:
78,768,812 bp from pter
Size:
364 bases
Orientation:
Plus strand

Genomic View for RPS21P3 Gene

Genes around RPS21P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS21P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS21P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS21P3 Gene

Proteins for RPS21P3 Gene

Post-translational modifications for RPS21P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS21P3 Gene

Domains & Families for RPS21P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS21P3 Gene

Function for RPS21P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS21P3 Gene

Localization for RPS21P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS21P3 Gene

Pathways & Interactions for RPS21P3 Gene

SuperPathways for RPS21P3 Gene

No Data Available

Interacting Proteins for RPS21P3 Gene

Gene Ontology (GO) - Biological Process for RPS21P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS21P3 Gene

Transcripts for RPS21P3 Gene

mRNA/cDNA for RPS21P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS21P3 Gene

No ASD Table

Relevant External Links for RPS21P3 Gene

GeneLoc Exon Structure for
RPS21P3
ECgene alternative splicing isoforms for
RPS21P3

Expression for RPS21P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS21P3 Gene

mRNA differential expression in normal tissues according to GTEx for RPS21P3 Gene

This gene is overexpressed in Testis (x20.3), Brain - Hypothalamus (x5.0), and Brain - Spinal cord (cervical c-1) (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of RPS21P3 Gene:

RPS21P3
genes like me logo Genes that share expression patterns with RPS21P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS21P3 Gene

Orthologs for RPS21P3 Gene

Evolution for RPS21P3 Gene

ENSEMBL:
Gene Tree for RPS21P3 (if available)
TreeFam:
Gene Tree for RPS21P3 (if available)

No data available for Orthologs for RPS21P3 Gene

Paralogs for RPS21P3 Gene

No data available for Paralogs for RPS21P3 Gene

Variants for RPS21P3 Gene

Relevant External Links for RPS21P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS21P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS21P3 Gene

Disorders for RPS21P3 Gene

No disorders were found for RPS21P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS21P3 Gene

Publications for RPS21P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS21P3 Gene

Sources for RPS21P3 Gene

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