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RPS20P6 Gene(Pseudogene)

Ribosomal Protein S20 Pseudogene 6

GCID:
GC01P101256
GIFtS:
10
Genes Participants
UDN Logo

Aliases for RPS20P6 Gene

Subcategory (RNA class) for RPS20P6 Gene

lncRNA

Aliases for RPS20P6 Gene

  • Ribosomal Protein S20 Pseudogene 6 2 3
  • RPS20_1_80 3
  • AL109741.2 5

External Ids for RPS20P6 Gene

ORGUL Members for RPS20P6 Gene

Previous GeneCards Identifiers for RPS20P6 Gene

  • GC01U902304
  • GC01P101722

Summaries for RPS20P6 Gene

GeneCards Summary for RPS20P6 Gene

RPS20P6 (Ribosomal Protein S20 Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS20P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P6 Gene

Genomics for RPS20P6 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPS20P6 Gene

Promoters and enhancers for RPS20P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01I101257 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.4 5371 9.1 PKNOX1 FOXA2 YBX1 FEZF1 ZNF2 YY1 ZNF766 SP5 REST SREBF1 ENSG00000252765 DPH5 LOC102606465 SLC30A7 GC01M101263 RPS20P6
GH01I101253 Enhancer 0.8 Ensembl 0.8 -2.1 -2103 0.5 HDAC1 PKNOX1 MZF1 ZNF2 TCF12 ZSCAN5C ZEB2 PRDM6 SMARCA4 IKZF1 ENSG00000252765 DPH5 LOC102606465 RPS20P6 ENSG00000260940
GH01I101249 Enhancer 0.6 dbSUPER 0.4 -5.4 -5354 2.4 JUN CEBPB CEBPG BRCA1 OSR2 ZNF335 ATF4 PRDM6 ZBTB48 POLR2A ENSG00000252765 ENSG00000260940 RPS20P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P6 Gene

Genomic Locations for RPS20P6 Gene
chr1:101,256,274-101,256,623
(GRCh38/hg38)
Size:
350 bases
Orientation:
Plus strand
chr1:101,721,830-101,722,179
(GRCh37/hg19)

Genomic View for RPS20P6 Gene

Genes around RPS20P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS20P6 Gene

Proteins for RPS20P6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS20P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P6 Gene

Domains & Families for RPS20P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P6 Gene

Function for RPS20P6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P6 Gene

Localization for RPS20P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P6 Gene

Pathways & Interactions for RPS20P6 Gene

SuperPathways for RPS20P6 Gene

PathCards logo More details on SuperPathways for RPS20P6
No Data Available

Interacting Proteins for RPS20P6 Gene

Gene Ontology (GO) - Biological Process for RPS20P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P6 Gene

Drugs & Compounds for RPS20P6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS20P6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS20P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P6 Gene

No ASD Table

Relevant External Links for RPS20P6 Gene

GeneLoc Exon Structure for
RPS20P6
ECgene alternative splicing isoforms for
RPS20P6

Expression for RPS20P6 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P6 Gene

mRNA expression in normal human tissues for RPS20P6 Gene
mRNA expression by GTEx for RPS20P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P6 Gene:

RPS20P6
genes like me logo Genes that share expression patterns with RPS20P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P6 Gene

Orthologs for RPS20P6 Gene

Evolution for RPS20P6 Gene

ENSEMBL:
Gene Tree for RPS20P6 (if available)
TreeFam:
Gene Tree for RPS20P6 (if available)

No data available for Orthologs for RPS20P6 Gene

Paralogs for RPS20P6 Gene

No data available for Paralogs for RPS20P6 Gene

Variants for RPS20P6 Gene

Additional Variant Information for RPS20P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P6 Gene

Disorders for RPS20P6 Gene

No disorders were found for RPS20P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P6 Gene

Publications for RPS20P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P6 Gene

Sources for RPS20P6 Gene

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