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Aliases for RPS20P29 Gene

Subcategory (RNA class) for RPS20P29 Gene

antisense

Aliases for RPS20P29 Gene

  • Ribosomal Protein S20 Pseudogene 29 2 3
  • RPS20_14_1201 3
  • RP11-277J24.1 5

External Ids for RPS20P29 Gene

ORGUL Members for RPS20P29 Gene

Previous GeneCards Identifiers for RPS20P29 Gene

  • GC12U901089
  • GC12P008014

Summaries for RPS20P29 Gene

GeneCards Summary for RPS20P29 Gene

RPS20P29 (Ribosomal Protein S20 Pseudogene 29) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P29 Gene

Genomics for RPS20P29 Gene

Regulatory Elements for RPS20P29 Gene

Enhancers for RPS20P29 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F006940 1.6 FANTOM5 ENCODE 16.2 -906.8 -906779 25.9 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SPSB2 ENSG00000219410 ENSG00000247853 NOP2 NCAPD2 SCARNA12 ENSG00000256967 LOC100419825 LOC100420983 DPPA3
GH12F006935 1.4 Ensembl ENCODE 16.2 -923.0 -923001 4.9 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 LOC100419825 LOC100420983 DPPA3 LOC100131676 NANOGNB RPS20P29 LRRC23 SPSB2 EMG1 C12orf57
GH12F006967 1.1 ENCODE 16.2 -890.5 -890520 5.4 PKNOX1 ARNT MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LOC100419825 LOC100420983 NANOGNB RPS20P29 LOC100131676 DPPA3 ENSG00000219410 ENSG00000247853 PHB2 LOC105369628
GH12F006975 0.5 ENCODE 16.2 -884.9 -884924 0.2 POLR2A YY2 ZNF645 ZNF514 LOC100419825 LOC100420983 LOC100131676 RPS20P29 DPPA3 NANOGNB C12orf57 ENSG00000219410 GC12P007369 PHB2
GH12F007858 1.5 FANTOM5 Ensembl ENCODE 0.8 +0.1 53 3.4 SIN3A FEZF1 ZNF2 ZNF143 FOS TSHZ1 ZNF488 REST TBX21 NFIL3 SLC2A14 NANOGP1 ENSG00000255356 CLEC4E RPS20P29 LOC100130582
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS20P29 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS20P29 Gene

Chromosome:
12
Start:
7,860,437 bp from pter
End:
7,860,764 bp from pter
Size:
328 bases
Orientation:
Plus strand

Genomic View for RPS20P29 Gene

Genes around RPS20P29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P29 Gene

Proteins for RPS20P29 Gene

Post-translational modifications for RPS20P29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P29 Gene

Domains & Families for RPS20P29 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P29 Gene

Function for RPS20P29 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P29 Gene

Localization for RPS20P29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS20P29 Gene

Pathways & Interactions for RPS20P29 Gene

SuperPathways for RPS20P29 Gene

No Data Available

Interacting Proteins for RPS20P29 Gene

Gene Ontology (GO) - Biological Process for RPS20P29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P29 Gene

Transcripts for RPS20P29 Gene

mRNA/cDNA for RPS20P29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P29 Gene

No ASD Table

Relevant External Links for RPS20P29 Gene

GeneLoc Exon Structure for
RPS20P29
ECgene alternative splicing isoforms for
RPS20P29

Expression for RPS20P29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS20P29 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P29 Gene:

RPS20P29
genes like me logo Genes that share expression patterns with RPS20P29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS20P29 Gene

Orthologs for RPS20P29 Gene

Evolution for RPS20P29 Gene

ENSEMBL:
Gene Tree for RPS20P29 (if available)
TreeFam:
Gene Tree for RPS20P29 (if available)

No data available for Orthologs for RPS20P29 Gene

Paralogs for RPS20P29 Gene

No data available for Paralogs for RPS20P29 Gene

Variants for RPS20P29 Gene

Relevant External Links for RPS20P29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P29 Gene

Disorders for RPS20P29 Gene

No disorders were found for RPS20P29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P29 Gene

Publications for RPS20P29 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS20P29 Gene

Sources for RPS20P29 Gene

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