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Aliases for RPS20P23 Gene

Subcategory (RNA class) for RPS20P23 Gene

lncRNA

Aliases for RPS20P23 Gene

  • Ribosomal Protein S20 Pseudogene 23 2 3 5
  • RPS20_9_932 3

External Ids for RPS20P23 Gene

ORGUL Members for RPS20P23 Gene

Previous GeneCards Identifiers for RPS20P23 Gene

  • GC08U901119
  • GC08M101789

Summaries for RPS20P23 Gene

GeneCards Summary for RPS20P23 Gene

RPS20P23 (Ribosomal Protein S20 Pseudogene 23) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P23 Gene

Genomics for RPS20P23 Gene

Regulatory Elements for RPS20P23 Gene

Enhancers for RPS20P23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F100760 1.4 FANTOM5 Ensembl ENCODE 0.4 +14.7 14679 2.5 SOX13 ESRRA PKNOX1 JUN RAD21 BRCA1 RARA GATA3 NR2F6 FOS RNU4-83P MIR7705 PABPC1 SNX31 YWHAZ RNF19A ENSG00000202001 GC08M100756 RPS20P23
GH08F100788 1.2 FANTOM5 Ensembl ENCODE 0.4 -12.8 -12847 3.0 JUN TEAD4 ZNF384 EP300 JUND ZNF512 FOS MYC PRDM1 TCF7L2 PABPC1 MIR7705 SNX31 RPS20P23 RNU4-83P
GH08F100806 1.3 FANTOM5 Ensembl ENCODE 0.3 -30.4 -30379 1.1 PKNOX1 ZFP64 ZBTB11 ZNF140 ZBTB8A REST ZNF623 RAD21 ZNF518A ZNF781 RNF19A SNX31 YWHAZ RNU4-83P RPS20P23
GH08F100763 0.9 ENCODE 0.4 +12.9 12879 0.8 HDAC1 CBX3 TBL1XR1 CHAMP1 GATA2 ZBTB2 ZBTB11 MBD2 KLF16 SMARCA4 MIR7705 PABPC1 ENSG00000202001 GC08M100756 RPS20P23
GH08F100809 1.1 FANTOM5 Ensembl ENCODE 0.3 -33.0 -33049 1.8 POLR2A FOXP2 RNF19A YWHAZ RNU4-83P RPS20P23
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS20P23 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS20P23 Gene

Chromosome:
8
Start:
100,776,512 bp from pter
End:
100,776,868 bp from pter
Size:
357 bases
Orientation:
Minus strand

Genomic View for RPS20P23 Gene

Genes around RPS20P23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P23 Gene

Proteins for RPS20P23 Gene

Post-translational modifications for RPS20P23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P23 Gene

Domains & Families for RPS20P23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P23 Gene

Function for RPS20P23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P23 Gene

Localization for RPS20P23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS20P23 Gene

Pathways & Interactions for RPS20P23 Gene

SuperPathways for RPS20P23 Gene

No Data Available

Interacting Proteins for RPS20P23 Gene

Gene Ontology (GO) - Biological Process for RPS20P23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P23 Gene

Transcripts for RPS20P23 Gene

mRNA/cDNA for RPS20P23 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P23 Gene

No ASD Table

Relevant External Links for RPS20P23 Gene

GeneLoc Exon Structure for
RPS20P23
ECgene alternative splicing isoforms for
RPS20P23

Expression for RPS20P23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS20P23 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P23 Gene:

RPS20P23
genes like me logo Genes that share expression patterns with RPS20P23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS20P23 Gene

Orthologs for RPS20P23 Gene

Evolution for RPS20P23 Gene

ENSEMBL:
Gene Tree for RPS20P23 (if available)
TreeFam:
Gene Tree for RPS20P23 (if available)

No data available for Orthologs for RPS20P23 Gene

Paralogs for RPS20P23 Gene

No data available for Paralogs for RPS20P23 Gene

Variants for RPS20P23 Gene

Relevant External Links for RPS20P23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P23 Gene

Disorders for RPS20P23 Gene

Relevant External Links for RPS20P23

Genetic Association Database (GAD)
RPS20P23

No disorders were found for RPS20P23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS20P23 Gene

Publications for RPS20P23 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Association of 8q22.3 locus in Chinese Han with idiopathic premature ovarian failure (POF). (PMID: 21989058) Qin Y. … Chen Z.J. (Hum. Mol. Genet. 2012) 46 64
  3. Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). (PMID: 19754311) Le Clerc S. … Zagury J.F. (J. Infect. Dis. 2009) 46 64

Products for RPS20P23 Gene

Sources for RPS20P23 Gene

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