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Aliases for RPS20P20 Gene

Subcategory (RNA class) for RPS20P20 Gene

lncRNA

Aliases for RPS20P20 Gene

  • Ribosomal Protein S20 Pseudogene 20 2 3 5
  • RPS20_11_915 3

External Ids for RPS20P20 Gene

ORGUL Members for RPS20P20 Gene

Previous GeneCards Identifiers for RPS20P20 Gene

  • GC08U901169
  • GC08P072809
  • GC08P068302

Summaries for RPS20P20 Gene

GeneCards Summary for RPS20P20 Gene

RPS20P20 (Ribosomal Protein S20 Pseudogene 20) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS20P20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P20 Gene

Genomics for RPS20P20 Gene

GeneHancer (GH) Regulatory Elements for RPS20P20 Gene

Promoters and enhancers for RPS20P20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I071856 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -37.9 -37919 2.4 EBF1 FEZF1 BATF ZNF366 POLR2A FOSL2 FOS RUNX3 ZNF189 ZNF501 MSC PIR51066 MSC-AS1 RPS20P20
GH08I071853 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -41.1 -41073 2 JUN FOSL1 ZNF335 POLR2A NFYB PRDM10 FOSL2 FOS ZNF600 ZNF10 ENSG00000200191 MSC PIR51066 MSC-AS1 RPS20P20
GH08I071924 Enhancer 1.1 FANTOM5 ENCODE 0.3 +28.3 28299 0.3 EBF1 CEBPG BATF IRF4 RELA IRF9 POLR2A ZNF143 TRIM24 ATF7 ENSG00000200191 RPS20P20 MSC-AS1 TRPA1 GC08M071877
GH08I071862 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -31.0 -30995 4.5 JUN MAX CEBPB CEBPG EP300 NR2F2 JUND MAFF ZBTB48 IKZF1 MSC MSC-AS1 PIR51066 RPS20P20
GH08I071860 Enhancer 0.8 FANTOM5 dbSUPER 0.3 -35.3 -35276 0.6 IKZF1 ZNF341 ATF7 EBF1 ZNF398 IKZF2 SPI1 MSC-AS1 PIR51066 RPS20P20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P20 Gene

Genomic Locations for RPS20P20 Gene
chr8:71,895,991-71,896,332
(GRCh38/hg38)
Size:
342 bases
Orientation:
Plus strand
chr8:72,808,226-72,808,567
(GRCh37/hg19)

Genomic View for RPS20P20 Gene

Genes around RPS20P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P20 Gene

Proteins for RPS20P20 Gene

Post-translational modifications for RPS20P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P20 Gene

Domains & Families for RPS20P20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P20 Gene

Function for RPS20P20 Gene

Phenotypes From GWAS Catalog for RPS20P20 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P20 Gene

Localization for RPS20P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P20 Gene

Pathways & Interactions for RPS20P20 Gene

SuperPathways for RPS20P20 Gene

No Data Available

Interacting Proteins for RPS20P20 Gene

Gene Ontology (GO) - Biological Process for RPS20P20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P20 Gene

Drugs & Compounds for RPS20P20 Gene

No Compound Related Data Available

Transcripts for RPS20P20 Gene

mRNA/cDNA for RPS20P20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P20 Gene

No ASD Table

Relevant External Links for RPS20P20 Gene

GeneLoc Exon Structure for
RPS20P20
ECgene alternative splicing isoforms for
RPS20P20

Expression for RPS20P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P20 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P20 Gene:

RPS20P20
genes like me logo Genes that share expression patterns with RPS20P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P20 Gene

Orthologs for RPS20P20 Gene

Evolution for RPS20P20 Gene

ENSEMBL:
Gene Tree for RPS20P20 (if available)
TreeFam:
Gene Tree for RPS20P20 (if available)

No data available for Orthologs for RPS20P20 Gene

Paralogs for RPS20P20 Gene

No data available for Paralogs for RPS20P20 Gene

Variants for RPS20P20 Gene

Additional Variant Information for RPS20P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P20 Gene

Disorders for RPS20P20 Gene

Additional Disease Information for RPS20P20

Genetic Association Database
(GAD)

No disorders were found for RPS20P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS20P20 Gene

Publications for RPS20P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P20 Gene

Sources for RPS20P20 Gene

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