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Aliases for RPS20P16 Gene

Aliases for RPS20P16 Gene

  • Ribosomal Protein S20 Pseudogene 16 2 3
  • RPS20_7_597 3
  • AC008850.3 5

External Ids for RPS20P16 Gene

Previous GeneCards Identifiers for RPS20P16 Gene

  • GC05U901110
  • GC05P096279

Summaries for RPS20P16 Gene

GeneCards Summary for RPS20P16 Gene

RPS20P16 (Ribosomal Protein S20 Pseudogene 16) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P16 Gene

Genomics for RPS20P16 Gene

Regulatory Elements for RPS20P16 Gene

Enhancers for RPS20P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F096884 1.1 Ensembl ENCODE 12 -56.5 -56536 2.3 HDGF TBP PKNOX1 WRNIP1 BMI1 GATA2 EGR1 SCRT2 ETV6 FOS ERAP2 LNPEP ENSG00000247121 RPS20P16 ERAP1 ENSG00000248734 LIX1
GH05F096868 1.1 Ensembl ENCODE 11.6 -73.1 -73100 0.4 CTCF SAP130 WRNIP1 ZFP64 ARID4B ZNF2 RAD21 ZNF664 ZNF316 GATA3 ERAP2 LNPEP ENSG00000247121 RPS20P16 LIX1 ENSG00000248734 LOC105379092
GH05F096875 0.9 ENCODE 12 -65.5 -65541 2.9 HDGF TBP HDAC1 PKNOX1 TBL1XR1 SIN3A ARID4B ZBTB40 RAD21 GATA2 ERAP2 ERAP1 ENSG00000248734 ENSG00000247121 LNPEP RPS20P16 LIX1 LOC105379093
GH05F096870 0.9 Ensembl ENCODE 11.6 -71.6 -71598 1.4 SOX13 PKNOX1 ZNF146 EBF1 TBX21 RELA SMARCA4 TARDBP SCRT2 CREM ERAP2 ERAP1 ENSG00000248734 LNPEP ENSG00000247121 RPS20P16 LIX1 LOC105379092
GH05F096894 0.8 ENCODE 12.4 -46.2 -46207 2.9 TBP CTCF PKNOX1 EBF1 RAD21 CBX5 EED ETV6 CREM HOMEZ ERAP2 ENSG00000247121 LNPEP RPS20P16 ERAP1 ENSG00000248734
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS20P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS20P16 Gene

Chromosome:
5
Start:
96,942,299 bp from pter
End:
96,943,189 bp from pter
Size:
891 bases
Orientation:
Plus strand

Genomic View for RPS20P16 Gene

Genes around RPS20P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P16 Gene

Proteins for RPS20P16 Gene

Post-translational modifications for RPS20P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P16 Gene

Domains & Families for RPS20P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P16 Gene

Function for RPS20P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P16 Gene

Localization for RPS20P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS20P16 Gene

Pathways & Interactions for RPS20P16 Gene

SuperPathways for RPS20P16 Gene

No Data Available

Interacting Proteins for RPS20P16 Gene

Gene Ontology (GO) - Biological Process for RPS20P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P16 Gene

Transcripts for RPS20P16 Gene

mRNA/cDNA for RPS20P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P16 Gene

No ASD Table

Relevant External Links for RPS20P16 Gene

GeneLoc Exon Structure for
RPS20P16
ECgene alternative splicing isoforms for
RPS20P16

Expression for RPS20P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS20P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P16 Gene:

RPS20P16
genes like me logo Genes that share expression patterns with RPS20P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS20P16 Gene

Orthologs for RPS20P16 Gene

Evolution for RPS20P16 Gene

ENSEMBL:
Gene Tree for RPS20P16 (if available)
TreeFam:
Gene Tree for RPS20P16 (if available)

No data available for Orthologs for RPS20P16 Gene

Paralogs for RPS20P16 Gene

No data available for Paralogs for RPS20P16 Gene

Variants for RPS20P16 Gene

Relevant External Links for RPS20P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P16 Gene

Disorders for RPS20P16 Gene

No disorders were found for RPS20P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P16 Gene

Publications for RPS20P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS20P16 Gene

Sources for RPS20P16 Gene

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