Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS20P13 Gene

Aliases for RPS20P13 Gene

  • Ribosomal Protein S20 Pseudogene 13 2 3
  • RPS20_5_284 3
  • AC105402.2 5

External Ids for RPS20P13 Gene

Previous GeneCards Identifiers for RPS20P13 Gene

  • GC02U901636
  • GC02M149628

Summaries for RPS20P13 Gene

GeneCards Summary for RPS20P13 Gene

RPS20P13 (Ribosomal Protein S20 Pseudogene 13) is a Pseudogene.

Additional gene information for RPS20P13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P13 Gene

Genomics for RPS20P13 Gene

GeneHancer (GH) Regulatory Elements for RPS20P13 Gene

Promoters and enhancers for RPS20P13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I148870 Enhancer 0.2 Ensembl 550.8 +0.1 66 0.4 GC02M148870 RPS20P13 LOC101928553
GH02I148926 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 -56.5 -56528 1.6 CTCF KLF1 LEF1 ARNT ZSCAN4 RAD21 CTBP1 POLR2A ZNF143 SMC3 LOC101928553 KIF5C LOC100420351 RPS20P13 LYPD6B GC02M148910
GH02I148812 Enhancer 1 Ensembl ENCODE 10.9 +56.9 56863 3.1 PKNOX1 SIN3A BATF IRF4 ZNF335 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 LOC101928553 RPS20P13 LOC100420351 KIF5C EPC2 RNU2-9P GC02M148813 GC02P148794
GH02I148908 Enhancer 0.5 dbSUPER 11.8 -38.8 -38756 1.8 NFIC NFIA L3MBTL2 ZNF189 FEZF1 GABPA KIF5C RPS20P13 LOC100420351 GC02M148910 LOC101928553 PIR59786
GH02I148919 Enhancer 0.4 ENCODE dbSUPER 11.4 -50.2 -50176 1.4 GC02M148910 KIF5C LOC100420351 RPS20P13 LOC101928553
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P13 Gene

Genomic Locations for RPS20P13 Gene
chr2:148,869,942-148,870,467
(GRCh38/hg38)
Size:
526 bases
Orientation:
Minus strand
chr2:149,627,550-149,628,075
(GRCh37/hg19)

Genomic View for RPS20P13 Gene

Genes around RPS20P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P13 Gene

Proteins for RPS20P13 Gene

Post-translational modifications for RPS20P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P13 Gene

Domains & Families for RPS20P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P13 Gene

Function for RPS20P13 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P13 Gene

Localization for RPS20P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P13 Gene

Pathways & Interactions for RPS20P13 Gene

SuperPathways for RPS20P13 Gene

No Data Available

Interacting Proteins for RPS20P13 Gene

Gene Ontology (GO) - Biological Process for RPS20P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P13 Gene

Drugs & Compounds for RPS20P13 Gene

No Compound Related Data Available

Transcripts for RPS20P13 Gene

mRNA/cDNA for RPS20P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P13 Gene

No ASD Table

Relevant External Links for RPS20P13 Gene

GeneLoc Exon Structure for
RPS20P13
ECgene alternative splicing isoforms for
RPS20P13

Expression for RPS20P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P13 Gene

mRNA differential expression in normal tissues according to GTEx for RPS20P13 Gene

This gene is overexpressed in Brain - Cerebellum (x8.5), Brain - Cerebellar Hemisphere (x7.9), Adrenal Gland (x4.8), and Brain - Hippocampus (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPS20P13 Gene:

RPS20P13
genes like me logo Genes that share expression patterns with RPS20P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P13 Gene

Orthologs for RPS20P13 Gene

Evolution for RPS20P13 Gene

ENSEMBL:
Gene Tree for RPS20P13 (if available)
TreeFam:
Gene Tree for RPS20P13 (if available)

No data available for Orthologs for RPS20P13 Gene

Paralogs for RPS20P13 Gene

No data available for Paralogs for RPS20P13 Gene

Variants for RPS20P13 Gene

Additional Variant Information for RPS20P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P13 Gene

Disorders for RPS20P13 Gene

No disorders were found for RPS20P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P13 Gene

Publications for RPS20P13 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P13 Gene

Sources for RPS20P13 Gene

Content
Loading form....