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Aliases for RPS20P13 Gene

Aliases for RPS20P13 Gene

  • Ribosomal Protein S20 Pseudogene 13 2 3
  • RPS20_5_284 3
  • AC105402.2 5

External Ids for RPS20P13 Gene

Previous GeneCards Identifiers for RPS20P13 Gene

  • GC02U901636
  • GC02M149628

Summaries for RPS20P13 Gene

GeneCards Summary for RPS20P13 Gene

RPS20P13 (Ribosomal Protein S20 Pseudogene 13) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P13 Gene

Genomics for RPS20P13 Gene

Regulatory Elements for RPS20P13 Gene

Enhancers for RPS20P13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G148926 1.3 Ensembl ENCODE dbSUPER 11.3 -56.5 -56528 1.6 CTCF LEF1 KLF1 CBX3 ARNT ZSCAN4 RAD21 RELA POLR2A ZNF143 KIF5C LOC100420351 RPS20P13 LYPD6B LOC101928553 GC02M148910
GH02G148812 1.1 Ensembl ENCODE 10.9 +56.9 56863 3.1 PKNOX1 TBL1XR1 EGR1 CBX5 ZNF143 RELB ETV6 IKZF2 CREM ZNF362 LOC101928553 LOC100420351 RPS20P13 KIF5C EPC2 RNU2-9P GC02P148794
GH02G148908 0.6 dbSUPER 11.8 -38.8 -38757 1.8 NFIC FOXA2 L3MBTL2 NFIA GABPB1 FEZF1 GABPA KIF5C RPS20P13 LOC100420351 GC02M148910 PIR59786
GH02G148919 0.5 ENCODE dbSUPER 11.3 -50.2 -50176 1.4 KIF5C LOC100420351 RPS20P13 GC02M148910 LOC101928553
GH02G148895 0.4 dbSUPER 12.8 -25.8 -25834 1.3 ZIC2 LOC100420351 KIF5C RPS20P13 PIR59786 GC02M148910
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS20P13 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS20P13 Gene

Chromosome:
2
Start:
148,869,942 bp from pter
End:
148,870,467 bp from pter
Size:
526 bases
Orientation:
Minus strand

Genomic View for RPS20P13 Gene

Genes around RPS20P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P13 Gene

Proteins for RPS20P13 Gene

Post-translational modifications for RPS20P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P13 Gene

Domains & Families for RPS20P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P13 Gene

Function for RPS20P13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P13 Gene

Localization for RPS20P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS20P13 Gene

Pathways & Interactions for RPS20P13 Gene

SuperPathways for RPS20P13 Gene

No Data Available

Interacting Proteins for RPS20P13 Gene

Gene Ontology (GO) - Biological Process for RPS20P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P13 Gene

Drugs & Compounds for RPS20P13 Gene

No Compound Related Data Available

Transcripts for RPS20P13 Gene

mRNA/cDNA for RPS20P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P13 Gene

No ASD Table

Relevant External Links for RPS20P13 Gene

GeneLoc Exon Structure for
RPS20P13
ECgene alternative splicing isoforms for
RPS20P13

Expression for RPS20P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P13 Gene

mRNA differential expression in normal tissues according to GTEx for RPS20P13 Gene

This gene is overexpressed in Brain - Cerebellum (x8.5), Brain - Cerebellar Hemisphere (x7.9), Adrenal Gland (x4.8), and Brain - Hippocampus (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPS20P13 Gene:

RPS20P13
genes like me logo Genes that share expression patterns with RPS20P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P13 Gene

Orthologs for RPS20P13 Gene

Evolution for RPS20P13 Gene

ENSEMBL:
Gene Tree for RPS20P13 (if available)
TreeFam:
Gene Tree for RPS20P13 (if available)

No data available for Orthologs for RPS20P13 Gene

Paralogs for RPS20P13 Gene

No data available for Paralogs for RPS20P13 Gene

Variants for RPS20P13 Gene

Relevant External Links for RPS20P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P13 Gene

Disorders for RPS20P13 Gene

No disorders were found for RPS20P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P13 Gene

Publications for RPS20P13 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS20P13 Gene

Sources for RPS20P13 Gene

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