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RPS19BP1 Gene

protein-coding   GIFtS: 51
GCID: GC22M039925

Ribosomal Protein S19 Binding Protein 1

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Ribosomal Protein S19 Binding Protein 11 2     Active Regulator Of SIRT12
S19BP2 3 5     dJ1104E15.42
40S Ribosomal Protein S19-Binding Protein 12 3     Homolog Of Mouse S19 Binding Protein2
AROS2 3     MGC520105
RPS19-Binding Protein 12 3     

External Ids:    HGNC: 287491   Entrez Gene: 915822   Ensembl: ENSG000001870517   OMIM: 6102255   UniProtKB: Q86WX33   
ORGUL members:         

Export aliases for RPS19BP1 gene to outside databases

Previous GC identifers: GC22M038255 GC22M022889


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RPS19BP1 Gene:
RPS19BP1 (ribosomal protein S19 binding protein 1) is a protein-coding gene.

UniProtKB/Swiss-Prot: AROS_HUMAN, Q86WX3
Function: Direct regulator of SIRT1. Enhances SIRT1-mediated deacetylation of p53/TP53, thereby participating in
inhibition of p53/TP53-mediated transcriptional activity




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000022.10  NC_018933.2  NT_011520.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the RPS19BP1 gene promoter:
         HOXA9B   HOXA9   Meis-1b   FOXJ2 (long isoform)   ZIC2/Zic2   Meis-1a   FOXJ2   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRPS19BP1 promoter sequence
   Search Chromatin IP Primers for RPS19BP1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPS19BP1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.1   Ensembl cytogenetic band:  22q13.1   HGNC cytogenetic band: 22q13.1

RPS19BP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RPS19BP1 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M039925:  view genomic region     (about GC identifiers)

Start:
39,925,098 bp from pter      End:
39,928,860 bp from pter
Size:
3,763 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: AROS_HUMAN, Q86WX3 (See protein sequence)
Recommended Name: Active regulator of SIRT1  
Size: 136 amino acids; 15434 Da
Subunit: Interacts with RPS19 (By similarity). Interacts with SIRT1
Secondary accessions: B0QY96 Q5JZA1

Explore the universe of human proteins at neXtProt for RPS19BP1: NX_Q86WX3

Explore proteomics data for RPS19BP1 at MOPED

Post-translational modifications: 

  • Citrullinated by PADI4 (By similarity)1
  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See RPS19BP1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_919307.1  
    ENSEMBL proteins: 
     ENSP00000333948   ENSP00000399304  
    Reactome Protein details: Q86WX3

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR023262 Active_regulator_of_SIRT1

    Graphical View of Domain Structure for InterPro Entry Q86WX3

    ProtoNet protein and cluster: Q86WX3

    UniProtKB/Swiss-Prot: AROS_HUMAN, Q86WX3
    Similarity: Belongs to the AROS family


    Find genes that share domains with RPS19BP1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: AROS_HUMAN, Q86WX3
    Function: Direct regulator of SIRT1. Enhances SIRT1-mediated deacetylation of p53/TP53, thereby participating in
    inhibition of p53/TP53-mediated transcriptional activity

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI17964266
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with RPS19BP1           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for RPS19BP1:
     Big cells 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for RPS19BP1

    miRNA
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    miRTarBase miRNAs that target RPS19BP1:
    hsa-mir-7-5p (MIRT025810)

    Block miRNA regulation of human, mouse, rat RPS19BP1 using miScript Target Protectors
    1 qRT-PCR Assays for microRNA that regulate RPS19BP1:
    hsa-miR-4267
    SwitchGear 3'UTR luciferase reporter plasmidRPS19BP1 3' UTR sequence
    Inhib. RNA
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    Gene Editing
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    AROS_HUMAN, Q86WX3: Nucleus, nucleolus
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    cytosol3
    mitochondrion2

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005654nucleoplasm ISS16289379
    GO:0005730nucleolus ISS16289379
    GO:0005737cytoplasm IDA--

    Find genes that share ontologies with RPS19BP1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Find genes that share SuperPaths with RPS19BP1           About GenesLikeMe

    Pathways by sourceSee SuperPaths
    Show all pathways


    1 Reactome Pathway for RPS19BP1
        Regulation of HSF1-mediated heat shock response


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RPS19BP1
    Interactions:

        Search GeneGlobe Interaction Network for RPS19BP1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for RPS19BP1 (Q86WX31, 3 ENSP000003339484) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RPS19P390193, ENSP000002219754I2D: score=1 STRING: ENSP00000221975
    SIRT1Q96EB61, ENSP000002120154EBI-4479407,EBI-1802965 STRING: ENSP00000212015
    TP53ENSP000002693054STRING: ENSP00000269305
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RPS19BP1 (AROS)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RPS19BP1 gene: 
    NM_194326.2  

    Unigene Cluster for RPS19BP1:

    Ribosomal protein S19 binding protein 1
    Hs.526933  [show with all ESTs]
    Unigene Representative Sequence: BM906920
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000334678(uc003ayb.3) ENST00000488602 ENST00000420879 ENST00000459956
    ENST00000491966 ENST00000472291
    miRNA
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    1 qRT-PCR Assays for microRNA that regulate RPS19BP1:
    hsa-miR-4267
    SwitchGear 3'UTR luciferase reporter plasmidRPS19BP1 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat RPS19BP1
      QuantiFast Probe-based Assays in human, mouse, rat RPS19BP1

    Additional mRNA sequence: 

    AK025423.1 BC037573.1 BC047711.1 CR456443.1 

    7 DOTS entries:

    DT.120691  DT.100810397  DT.95107790  DT.75183215  DT.100657566  DT.95107814  DT.97847896 

    Selected AceView cDNA sequences (see all 259):

    BM806269 BQ636176 CB142920 BU623537 BM550980 BU738025 CR610413 CD671203 
    BG014741 BE264258 AI192280 BI861144 BU584972 AI298756 CR456443 CF130666 
    CR592741 AW964799 CD673303 BE274335 CD671204 BG716279 NM_194326 CA306952 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for RPS19BP1 (see all 6)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d
    SP1:                          -     -                                       
    SP2:                          -     -     -                                 
    SP3:                          -     -     -                                 
    SP4:                                                                        
    SP5:                          -     -     -                                 


    ECgene alternative splicing isoforms for RPS19BP1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RPS19BP1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCCGCCGCCC
    RPS19BP1 Expression
    About this image

    RPS19BP1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RPS19BP1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.526933

    UniProtKB/Swiss-Prot: AROS_HUMAN, Q86WX3
    Tissue specificity: Widely expressed (at protein level)

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for RPS19BP1 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rps19bp11 , 5 ribosomal protein S19 binding protein 11, 5 81.37(n)1
    78.68(a)1
      15 (37.85 cM)5
    665381  NM_175109.31  NP_780318.11 
     802606145 
    chicken
    (Gallus gallus)
    Aves RPS19BP11 ribosomal protein S19 binding protein 1 58.4(n)
    52.63(a)
      418011  NM_001006239.3  NP_001006239.2 
    lizard
    (Anolis carolinensis)
    Reptilia RPS19BP16
    ribosomal protein S19 binding protein 1
    42(a)
    1 ↔ 1
    5(24915324-24918460)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia rps19bp11 active regulator of SIRT1 47.65(n)
    39.26(a)
      733497  NM_001044432.1  NP_001037897.1 
    zebrafish
    (Danio rerio)
    Actinopterygii rps19bp16
    ribosomal protein S19 binding protein 1
    35(a)
    1 ↔ 1
    6(213585-216407) ENSDARG00000091124


    ENSEMBL Gene Tree for RPS19BP1 (if available)
    TreeFam Gene Tree for RPS19BP1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RPS19BP1 (see all 141)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 22 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs738852471,2
    C,F--39924614(+) CGCCTC/TCATCC 1 -- int12Minor allele frequency- T:0.12WA 120
    rs1513259361,2
    --39924641(+) CTGAGC/TGTGAA 1 -- int10--------
    rs1406351311,2
    --39924649(+) GAAACC/TGTTTC 1 -- int10--------
    rs797420951,2
    F--39924760(+) ACACCG/AGGTGA 1 -- int11Minor allele frequency- A:0.03WA 118
    rs1499773551,2
    C--39924777(+) CCGCTC/TATGGC 1 -- int10--------
    rs1160695301,2
    C,F--39924791(+) CTCCAC/TGCTCC 1 -- int11Minor allele frequency- T:0.09WA 118
    rs1814190781,2
    --39924792(+) TCCACA/GCTCCC 1 -- int10--------
    rs1859973701,2
    --39924803(+) CGGGCA/GCAGGC 1 -- int10--------
    rs1908687631,2
    --39924808(+) GCAGGC/GGGAAG 1 -- int10--------
    rs1476724001,2
    --39924842(+) CCAGCC/TACCTG 1 -- int10--------

    HapMap Linkage Disequilibrium report for RPS19BP1 (39925098 - 39928860 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for RPS19BP1:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv3629CNV Insertion18451855
    nsv915099CNV Loss21882294
    nsv834199CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RPS19BP1
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 610225    OMIM disorders: --


    Find genes that share disorders with RPS19BP1           About GenesLikeMe


    Export disorders for RPS19BP1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RPS19BP1 gene, integrated from 10 sources (see all 16):
    (articles sorted by number of sources associating them with RPS19BP1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel nucleolar protein interacts with ribosomal protein S19. (PubMed id 16289379)1, 3, 9 Maeda N....Tanaka T. (Biochem. Biophys. Res. Commun. 2006)
    2. Active regulator of SIRT1 cooperates with SIRT1 and facilitates suppression of p53 activity. (PubMed id 17964266)1, 2 Kim E.-J.... Um S.-J. (Mol. Cell 2007)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)1, 2 Collins J.E.... Dunham I. (Genome Biol. 2004)
    5. The DNA sequence of human chromosome 22. (PubMed id 10591208)1, 2 Dunham I.... Wright H. (Nature 1999)
    6. The SIRT1 modulators AROS and DBC1 regulate HSF1 activity and the heat shock response. (PubMed id 23349863)1 Raynes R....Westerheide S.D. (PLoS ONE 2013)
    7. A high-confidence interaction map identifies SIRT1 as a mediator of acetylation of USP22 and the SAGA coactivator complex. (PubMed id 23382074)1 Armour S.M....Sinclair D.A. (Mol. Cell. Biol. 2013)
    8. Molecular architecture of the human protein deacetylase Sirt1 and its regulation by AROS and resveratrol. (PubMed id 23548308)1 Lakshminarasimhan M....Steegborn C. (Biosci. Rep. 2013)
    9. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    10. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 91582 HGNC: 28749 AceView: MGC52010 Ensembl:ENSG00000187051 euGenes: HUgn91582
    ECgene: RPS19BP1 H-InvDB: RPS19BP1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RPS19BP1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RPS19BP1 gene:
    Search GeneIP for patents involving RPS19BP1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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