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Aliases for RPS18P9 Gene

Aliases for RPS18P9 Gene

  • Ribosomal Protein S18 Pseudogene 9 2 3 5
  • RPS18_6_767 3

External Ids for RPS18P9 Gene

Previous GeneCards Identifiers for RPS18P9 Gene

  • GC06P149956
  • GC06P149960
  • GC06P149917
  • GC06P149918
  • GC06P149920
  • GC06P149926

Summaries for RPS18P9 Gene

GeneCards Summary for RPS18P9 Gene

RPS18P9 (Ribosomal Protein S18 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS18P9 Gene

Genomics for RPS18P9 Gene

Regulatory Elements for RPS18P9 Gene

Enhancers for RPS18P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G149842 1.6 Ensembl ENCODE dbSUPER 19 +251.6 251600 6.4 HDGF FOXA2 PKNOX1 ARNT SIN3A ZNF207 FOS ZNF263 MCM3 JUNB ENSG00000231760 LATS1 RPS18P9 RAET1E GINM1 ENSG00000202343 ENSG00000233330 LRP11 ENSG00000273132
GH06G150409 0.8 ENCODE 27.5 +816.1 816137 0.8 NFIB INSM2 ZNF195 FEZF1 ZNF101 ZNF366 PATZ1 ZSCAN5C ZNF350 PRDM10 LATS1 RPS18P9 PPIL4 ENSG00000233330 ENSG00000202343 NUP43 ZBTB2 SSR1P1 LOC100420304
GH06G149761 1.1 Ensembl ENCODE 19.8 +168.1 168061 0.6 HDAC1 PKNOX1 ESRRA FOSL1 ARID3A NR2F6 RELB IKZF2 HES1 SMARCE1 ENSG00000231760 RPS18P9 LATS1 ENSG00000202343 ENSG00000233330 NUP43 BTBD10P2
GH06G150417 1.6 FANTOM5 Ensembl ENCODE 10 +825.0 824978 2.2 PKNOX1 FEZF1 ZNF2 CBX5 ZNF143 FOS SP3 JUNB REST ZNF662 LATS1 RPS18P9 SSR1P1 LOC100420304
GH06G149011 1.5 Ensembl ENCODE dbSUPER 10 -581.5 -581463 1.3 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF121 FOS TSHZ1 ZNF518A ZNF610 LATS1 UST-AS1 RPS18P9 ENSG00000202343 TAB2 LOC105378047
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS18P9 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS18P9 Gene

Chromosome:
6
Start:
149,593,616 bp from pter
End:
149,594,602 bp from pter
Size:
987 bases
Orientation:
Plus strand

Genomic View for RPS18P9 Gene

Genes around RPS18P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS18P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS18P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS18P9 Gene

Proteins for RPS18P9 Gene

Post-translational modifications for RPS18P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS18P9 Gene

Domains & Families for RPS18P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS18P9 Gene

Function for RPS18P9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS18P9 Gene

Localization for RPS18P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS18P9 Gene

Pathways & Interactions for RPS18P9 Gene

SuperPathways for RPS18P9 Gene

No Data Available

Interacting Proteins for RPS18P9 Gene

Gene Ontology (GO) - Biological Process for RPS18P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS18P9 Gene

Transcripts for RPS18P9 Gene

mRNA/cDNA for RPS18P9 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS18P9 Gene

Ribosomal protein S18 pseudogene 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS18P9 Gene

No ASD Table

Relevant External Links for RPS18P9 Gene

GeneLoc Exon Structure for
RPS18P9
ECgene alternative splicing isoforms for
RPS18P9

Expression for RPS18P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS18P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS18P9 Gene:

RPS18P9

SOURCE GeneReport for Unigene cluster for RPS18P9 Gene:

Hs.632614
genes like me logo Genes that share expression patterns with RPS18P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS18P9 Gene

Orthologs for RPS18P9 Gene

Evolution for RPS18P9 Gene

ENSEMBL:
Gene Tree for RPS18P9 (if available)
TreeFam:
Gene Tree for RPS18P9 (if available)

No data available for Orthologs for RPS18P9 Gene

Paralogs for RPS18P9 Gene

No data available for Paralogs for RPS18P9 Gene

Variants for RPS18P9 Gene

Sequence variations from dbSNP and Humsavar for RPS18P9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000284535 -- 149,592,081(+) GCGCA(A/G)TCTCG upstream-variant-2KB
rs1000660439 -- 149,593,456(+) TTTCT(C/T)AGTAA upstream-variant-2KB
rs1001087245 -- 149,591,802(+) ATGGC(C/T)GAGAT upstream-variant-2KB
rs1001636269 -- 149,594,570(+) ATAAA(C/T)AGTTT nc-transcript-variant, downstream-variant-500B
rs1001668776 -- 149,594,915(+) AAGGG(-/T)TTTTT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RPS18P9 Gene

Variant ID Type Subtype PubMed ID
nsv970171 CNV duplication 23825009

Relevant External Links for RPS18P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS18P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS18P9 Gene

Disorders for RPS18P9 Gene

Relevant External Links for RPS18P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS18P9

No disorders were found for RPS18P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS18P9 Gene

Publications for RPS18P9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPS18P9 Gene

Sources for RPS18P9 Gene

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