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Aliases for RPS18P9 Gene

Aliases for RPS18P9 Gene

  • Ribosomal Protein S18 Pseudogene 9 2 3 5
  • RPS18_6_767 3

External Ids for RPS18P9 Gene

Previous GeneCards Identifiers for RPS18P9 Gene

  • GC06P149956
  • GC06P149960
  • GC06P149917
  • GC06P149918
  • GC06P149920
  • GC06P149926

Summaries for RPS18P9 Gene

GeneCards Summary for RPS18P9 Gene

RPS18P9 (Ribosomal Protein S18 Pseudogene 9) is a Pseudogene.

Additional gene information for RPS18P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS18P9 Gene

Genomics for RPS18P9 Gene

GeneHancer (GH) Regulatory Elements for RPS18P9 Gene

Promoters and enhancers for RPS18P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I150004 Promoter/Enhancer 1.5 Ensembl ENCODE 20.5 +411.5 411536 1.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF213 ZNF207 RAET1K LATS1 PPIL4 ENSG00000233330 RPS18P9 ULBP1 NUP43 KATNA1 GINM1 ENSG00000231760
GH06I150417 Enhancer 1.5 FANTOM5 Ensembl ENCODE 20.1 +825.0 824977 2.2 PKNOX1 FEZF1 ZNF2 IRF4 CBX5 ZNF213 ZNF143 SP3 JUNB ZNF662 LATS1 RPS18P9 HSPA8P15 ENSG00000233330 PPIL4 NUP43 SSR1P1 LOC100420304
GH06I149646 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.7 +54.3 54272 3.4 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC KATNA1 ENSG00000231760 PPIL4 LATS1 RPS18P9 ENSG00000233330 ENSG00000207292 GC06P149237
GH06I150409 Enhancer 0.8 ENCODE 35.9 +816.1 816137 0.8 SMAD1 NFIB ZNF529 INSM2 MZF1 ZNF195 FEZF1 LCORL ZNF366 PATZ1 LATS1 RPS18P9 ENSG00000268592 ENSG00000216906 LRP11 ENSG00000202343 PPIL4 ENSG00000233330 AKAP12 NUP43
GH06I149842 Enhancer 1.4 Ensembl ENCODE dbSUPER 19 +251.6 251600 6.4 CLOCK SMAD1 FOXA2 SIN3A NCOA2 ATF7 FOS ZNF214 MCM3 JUNB ENSG00000231760 LATS1 GINM1 RPS18P9 RAET1E NUP43 ENSG00000268592 LRP11 ENSG00000216906 KATNA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS18P9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS18P9 Gene

Genomic Locations for RPS18P9 Gene
chr6:149,593,616-149,594,602
(GRCh38/hg38)
Size:
987 bases
Orientation:
Plus strand
chr6:149,915,175-149,915,717
(GRCh37/hg19)

Genomic View for RPS18P9 Gene

Genes around RPS18P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS18P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS18P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS18P9 Gene

Proteins for RPS18P9 Gene

Post-translational modifications for RPS18P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS18P9 Gene

Domains & Families for RPS18P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS18P9 Gene

Function for RPS18P9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS18P9 Gene

Localization for RPS18P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS18P9 Gene

Pathways & Interactions for RPS18P9 Gene

SuperPathways for RPS18P9 Gene

No Data Available

Interacting Proteins for RPS18P9 Gene

Gene Ontology (GO) - Biological Process for RPS18P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS18P9 Gene

Drugs & Compounds for RPS18P9 Gene

No Compound Related Data Available

Transcripts for RPS18P9 Gene

mRNA/cDNA for RPS18P9 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS18P9 Gene

Ribosomal protein S18 pseudogene 9:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS18P9 Gene

No ASD Table

Relevant External Links for RPS18P9 Gene

GeneLoc Exon Structure for
RPS18P9
ECgene alternative splicing isoforms for
RPS18P9

Expression for RPS18P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS18P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS18P9 Gene:

RPS18P9

SOURCE GeneReport for Unigene cluster for RPS18P9 Gene:

Hs.632614
genes like me logo Genes that share expression patterns with RPS18P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS18P9 Gene

Orthologs for RPS18P9 Gene

Evolution for RPS18P9 Gene

ENSEMBL:
Gene Tree for RPS18P9 (if available)
TreeFam:
Gene Tree for RPS18P9 (if available)

No data available for Orthologs for RPS18P9 Gene

Paralogs for RPS18P9 Gene

No data available for Paralogs for RPS18P9 Gene

Variants for RPS18P9 Gene

Sequence variations from dbSNP and Humsavar for RPS18P9 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000284535 -- 149,592,081(+) A/G upstream_transcript_variant
rs1000660439 -- 149,593,456(+) C/T upstream_transcript_variant
rs1001087245 -- 149,591,802(+) T/C upstream_transcript_variant
rs1001636269 -- 149,594,570(+) T/C non_coding_transcript_variant
rs1002268869 -- 149,592,157(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPS18P9 Gene

Variant ID Type Subtype PubMed ID
nsv970171 CNV duplication 23825009

Additional Variant Information for RPS18P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS18P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS18P9 Gene

Disorders for RPS18P9 Gene

Additional Disease Information for RPS18P9

No disorders were found for RPS18P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS18P9 Gene

Publications for RPS18P9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPS18P9 Gene

Sources for RPS18P9 Gene

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