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Aliases for RPS18P9 Gene

Aliases for RPS18P9 Gene

  • Ribosomal Protein S18 Pseudogene 9 2 3 5
  • RPS18_6_767 3

External Ids for RPS18P9 Gene

Previous GeneCards Identifiers for RPS18P9 Gene

  • GC06P149956
  • GC06P149960
  • GC06P149917
  • GC06P149918
  • GC06P149920
  • GC06P149926

Summaries for RPS18P9 Gene

GeneCards Summary for RPS18P9 Gene

RPS18P9 (Ribosomal Protein S18 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS18P9 Gene

Genomics for RPS18P9 Gene

Regulatory Elements for RPS18P9 Gene

Enhancers for RPS18P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F149646 0.7 ENCODE 13.7 +54.3 54273 3.4 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ENSG00000231760 PPIL4 LATS1 ENSG00000233330 RPS18P9 GINM1 KATNA1 ENSG00000207292
GH06F149470 0.8 Ensembl ENCODE 13.6 -120.5 -120536 4.7 HDGF PKNOX1 WRNIP1 FEZF1 KLF7 ZNF548 SP3 JUNB REST TBX21 LATS1 PPIL4 NUP43 RPS18P9 KATNA1 ENSG00000233330 ENSG00000231760 GINM1 RAET1G ZC3H12D
GH06F149327 1.1 Ensembl ENCODE 13.5 -260.5 -260516 11.4 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 TAB2 LATS1 PPIL4 RPS18P9 SUMO4 LOC105378047 ENSG00000233330 LOC105378049 ENSG00000231760 GINM1
GH06F150238 1 Ensembl ENCODE 13.5 +644.8 644785 0.8 IRF2 ZNF175 ZNF140 FOSL1 GATA2 ZNF584 ZNF433 ZNF639 STAT1 RNF2 LATS1 PPIL4 RPS18P9 ENSG00000233330 PPP1R14C LOC105378054 ENSG00000238594
GH06F148751 0.6 Ensembl 13.5 -842.5 -842516 0.2 CEBPB STAT3 ZNF140 RCOR1 RFX5 LATS1 PPIL4 RPS18P9 ENSG00000233330 UST GC06P148933
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS18P9 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS18P9 Gene

Chromosome:
6
Start:
149,593,616 bp from pter
End:
149,594,602 bp from pter
Size:
987 bases
Orientation:
Plus strand

Genomic View for RPS18P9 Gene

Genes around RPS18P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS18P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS18P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS18P9 Gene

Proteins for RPS18P9 Gene

Post-translational modifications for RPS18P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS18P9 Gene

Domains & Families for RPS18P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS18P9 Gene

Function for RPS18P9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS18P9 Gene

Localization for RPS18P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS18P9 Gene

Pathways & Interactions for RPS18P9 Gene

SuperPathways for RPS18P9 Gene

No Data Available

Interacting Proteins for RPS18P9 Gene

Gene Ontology (GO) - Biological Process for RPS18P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS18P9 Gene

Transcripts for RPS18P9 Gene

mRNA/cDNA for RPS18P9 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS18P9 Gene

Ribosomal protein S18 pseudogene 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS18P9 Gene

No ASD Table

Relevant External Links for RPS18P9 Gene

GeneLoc Exon Structure for
RPS18P9
ECgene alternative splicing isoforms for
RPS18P9

Expression for RPS18P9 Gene

mRNA expression in normal human tissues for RPS18P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS18P9 Gene:

RPS18P9

SOURCE GeneReport for Unigene cluster for RPS18P9 Gene:

Hs.632614
genes like me logo Genes that share expression patterns with RPS18P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS18P9 Gene

Orthologs for RPS18P9 Gene

Evolution for RPS18P9 Gene

ENSEMBL:
Gene Tree for RPS18P9 (if available)
TreeFam:
Gene Tree for RPS18P9 (if available)

No data available for Orthologs for RPS18P9 Gene

Paralogs for RPS18P9 Gene

No data available for Paralogs for RPS18P9 Gene

Variants for RPS18P9 Gene

Sequence variations from dbSNP and Humsavar for RPS18P9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111495782 -- 149,593,030(+) ATGCC(C/T)GGCCA upstream-variant-2KB
rs11155662 -- 149,592,731(+) ATGGT(G/T)Gtttt upstream-variant-2KB
rs112165893 -- 149,594,877(+) ATTTT(C/G)AGCTT intron-variant, utr-variant-3-prime
rs112266911 -- 149,594,915(+) AAGGG(G/T)TTTTT intron-variant, utr-variant-3-prime
rs113339415 -- 149,594,583(+) ATACC(-/AA)AAAAA nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RPS18P9 Gene

Variant ID Type Subtype PubMed ID
nsv970171 CNV duplication 23825009

Relevant External Links for RPS18P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS18P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS18P9 Gene

Disorders for RPS18P9 Gene

Relevant External Links for RPS18P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS18P9

No disorders were found for RPS18P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS18P9 Gene

Publications for RPS18P9 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPS18P9 Gene

Sources for RPS18P9 Gene

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