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Aliases for RPS18P1 Gene

Subcategory (RNA class) for RPS18P1 Gene

lncRNA

Aliases for RPS18P1 Gene

  • Ribosomal Protein S18 Pseudogene 1 2 3 5
  • RPS18_9_1682 3
  • DJ1022P6.1 3

External Ids for RPS18P1 Gene

ORGUL Members for RPS18P1 Gene

Previous GeneCards Identifiers for RPS18P1 Gene

  • GC20U990089
  • GC20M005473
  • GC20P005461
  • GC20P005508
  • GC20P005515
  • GC20P005469
  • GC20P005516

Summaries for RPS18P1 Gene

GeneCards Summary for RPS18P1 Gene

RPS18P1 (Ribosomal Protein S18 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS18P1 Gene

Genomics for RPS18P1 Gene

Regulatory Elements for RPS18P1 Gene

Enhancers for RPS18P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G005788 1.4 Ensembl ENCODE dbSUPER 11.9 +255.6 255623 0.6 ELF3 RB1 ARID4B RAD21 CBX5 ZNF143 THAP11 ZNF654 REST MIER2 ENSG00000235820 RPS18P1 GPCPD1 CRLS1 TRMT6 MCM8 CHGB C20orf196 GC20P005890
GH20G005820 1.2 Ensembl ENCODE 11.4 +288.5 288457 1.9 MLX ARID4B DMAP1 ZNF48 GLIS2 SP5 MIER2 PPARG KAT8 SSRP1 ENSG00000235820 RPS18P1 CHGB TRMT6 MCM8 GC20P005890 C20orf196
GH20G005787 1.1 Ensembl ENCODE dbSUPER 11.9 +254.4 254423 0.6 PKNOX1 NFIA RAD21 CREB3 ZNF664 PRDM6 NFIC PBX2 GLIS1 ENSG00000235820 RPS18P1 GPCPD1 CRLS1 TRMT6 MCM8 CHGB C20orf196 GC20P005890
GH20G006074 1.1 Ensembl ENCODE 11.9 +542.7 542651 3.0 PKNOX1 ARID4B THRB RAD21 RARA YY1 ZNF766 ZNF143 MIXL1 THAP11 FERMT1 RPS18P1 ENSG00000235820 CRLS1 MCM8 TRMT6 GC20P006069 GC20M006119
GH20G005778 1.1 ENCODE 11.6 +248.1 248139 4.4 HDGF FOXA2 MLX ARNT ZFP64 ARID4B DMAP1 SLC30A9 ZNF766 ZNF143 RPS18P1 ENSG00000235820 GPCPD1 CHGB MCM8 TRMT6 C20orf196 GC20P005890
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS18P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS18P1 Gene

Chromosome:
20
Start:
5,532,878 bp from pter
End:
5,533,335 bp from pter
Size:
458 bases
Orientation:
Plus strand

Genomic View for RPS18P1 Gene

Genes around RPS18P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS18P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS18P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS18P1 Gene

Proteins for RPS18P1 Gene

Post-translational modifications for RPS18P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS18P1 Gene

Domains & Families for RPS18P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS18P1 Gene

Function for RPS18P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS18P1 Gene

Localization for RPS18P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS18P1 Gene

Pathways & Interactions for RPS18P1 Gene

SuperPathways for RPS18P1 Gene

No Data Available

Interacting Proteins for RPS18P1 Gene

Gene Ontology (GO) - Biological Process for RPS18P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS18P1 Gene

Drugs & Compounds for RPS18P1 Gene

No Compound Related Data Available

Transcripts for RPS18P1 Gene

mRNA/cDNA for RPS18P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS18P1 Gene

No ASD Table

Relevant External Links for RPS18P1 Gene

GeneLoc Exon Structure for
RPS18P1
ECgene alternative splicing isoforms for
RPS18P1

Expression for RPS18P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS18P1 Gene

mRNA differential expression in normal tissues according to GTEx for RPS18P1 Gene

This gene is overexpressed in Whole Blood (x14.7) and Testis (x14.4).

NURSA nuclear receptor signaling pathways regulating expression of RPS18P1 Gene:

RPS18P1
genes like me logo Genes that share expression patterns with RPS18P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS18P1 Gene

Orthologs for RPS18P1 Gene

Evolution for RPS18P1 Gene

ENSEMBL:
Gene Tree for RPS18P1 (if available)
TreeFam:
Gene Tree for RPS18P1 (if available)

No data available for Orthologs for RPS18P1 Gene

Paralogs for RPS18P1 Gene

No data available for Paralogs for RPS18P1 Gene

Variants for RPS18P1 Gene

Relevant External Links for RPS18P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS18P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS18P1 Gene

Disorders for RPS18P1 Gene

No disorders were found for RPS18P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS18P1 Gene

Publications for RPS18P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 64
  5. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 3 64

Products for RPS18P1 Gene

Sources for RPS18P1 Gene

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