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Aliases for RPS17P5 Gene

Aliases for RPS17P5 Gene

  • Ribosomal Protein S17 Pseudogene 5 2 3 5
  • Ribosomal Protein S17-Like 4 2 3
  • RPS17_4_700 3
  • DJ753D5.2 3
  • RPS17L4 3

External Ids for RPS17P5 Gene

Previous HGNC Symbols for RPS17P5 Gene

  • RPS17L4

Previous GeneCards Identifiers for RPS17P5 Gene

  • GC06M050934
  • GC06M050556

Summaries for RPS17P5 Gene

GeneCards Summary for RPS17P5 Gene

RPS17P5 (Ribosomal Protein S17 Pseudogene 5) is a Pseudogene.

Additional gene information for RPS17P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS17P5 Gene

Genomics for RPS17P5 Gene

GeneHancer (GH) Regulatory Elements for RPS17P5 Gene

Promoters and enhancers for RPS17P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I050854 Enhancer 0.5 UCNEbase 0.8 +3.5 3498 0.3 EZH2 RPS17P5 TFAP2B
GH06I050850 Enhancer 0.6 FANTOM5 0.4 +7.1 7143 0.5 MXI1 USF1 RFX1 MTA1 NRF1 MNT EZH2 TFAP2B RPS17P5
GH06I050843 Enhancer 0.6 ENCODE 0.4 +13.7 13664 0.2 MAZ HLF CEBPB CEBPG GATA3 VEZF1 ZNF512 CTBP2 EZH2 RPS17P5 TFAP2B
GH06I050818 Promoter 0.8 EPDnew 0.3 +38.9 38905 0.1 POLR2A RCOR1 REST CHD2 EZH2 TFAP2B RPS17P5
GH06I050841 Enhancer 0.5 ENCODE 0.4 +15.0 15004 1.4 SIN3A CTBP2 ZBTB33 EZH2 TFAP2B RPS17P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS17P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS17P5 Gene

Genomic Locations for RPS17P5 Gene
chr6:50,857,209-50,857,687
(GRCh38/hg38)
Size:
479 bases
Orientation:
Minus strand
chr6:50,824,922-50,825,400
(GRCh37/hg19)

Genomic View for RPS17P5 Gene

Genes around RPS17P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS17P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS17P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS17P5 Gene

Proteins for RPS17P5 Gene

Post-translational modifications for RPS17P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS17P5 Gene

Domains & Families for RPS17P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS17P5 Gene

Function for RPS17P5 Gene

Phenotypes From GWAS Catalog for RPS17P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS17P5 Gene

Localization for RPS17P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS17P5 Gene

Pathways & Interactions for RPS17P5 Gene

SuperPathways for RPS17P5 Gene

No Data Available

Interacting Proteins for RPS17P5 Gene

Gene Ontology (GO) - Biological Process for RPS17P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS17P5 Gene

Drugs & Compounds for RPS17P5 Gene

No Compound Related Data Available

Transcripts for RPS17P5 Gene

mRNA/cDNA for RPS17P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS17P5 Gene

No ASD Table

Relevant External Links for RPS17P5 Gene

GeneLoc Exon Structure for
RPS17P5
ECgene alternative splicing isoforms for
RPS17P5

Expression for RPS17P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS17P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS17P5 Gene:

RPS17P5
genes like me logo Genes that share expression patterns with RPS17P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS17P5 Gene

Orthologs for RPS17P5 Gene

Evolution for RPS17P5 Gene

ENSEMBL:
Gene Tree for RPS17P5 (if available)
TreeFam:
Gene Tree for RPS17P5 (if available)

No data available for Orthologs for RPS17P5 Gene

Paralogs for RPS17P5 Gene

No data available for Paralogs for RPS17P5 Gene

Variants for RPS17P5 Gene

Additional Variant Information for RPS17P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS17P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS17P5 Gene

Disorders for RPS17P5 Gene

Additional Disease Information for RPS17P5

Genetic Association Database
(GAD)

No disorders were found for RPS17P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS17P5 Gene

Publications for RPS17P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide population-based association study of extremely overweight young adults--the GOYA study. (PMID: 21935397) Paternoster L … Sørensen TI (PloS one 2011) 44 58
  3. Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study. (PMID: 17903297) Seshadri S … Wolf PA (BMC medical genetics 2007) 44 58
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58
  5. The transcriptionally active human ribosomal protein S17 gene. (PMID: 3240863) Chen IT … Roufa DJ (Gene 1988) 3 58

Products for RPS17P5 Gene

Sources for RPS17P5 Gene

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