Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS17P3 Gene

Aliases for RPS17P3 Gene

  • Ribosomal Protein S17 Pseudogene 3 2 3
  • Ribosomal Protein S17b-Like 2 (Pseudogene) 2 3
  • Ribosomal Protein Pseudogene S17b 3
  • Ribosomal Protein S17-Like 2 3
  • CTD-2349P21.1 5
  • RPS17_7_1537 3
  • RPS17L2 3
  • RPS17B 3

External Ids for RPS17P3 Gene

Previous HGNC Symbols for RPS17P3 Gene

  • RPS17L2
  • RPS17B

Previous GeneCards Identifiers for RPS17P3 Gene

  • GC17U990086
  • GC17P026186
  • GC17P029158

Summaries for RPS17P3 Gene

GeneCards Summary for RPS17P3 Gene

RPS17P3 (Ribosomal Protein S17 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS17P3 Gene

Genomics for RPS17P3 Gene

Regulatory Elements for RPS17P3 Gene

Enhancers for RPS17P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F030807 1.1 FANTOM5 ENCODE 12.4 -21.8 -21778 5.1 HDGF CTCF HDAC1 TBP TFAP4 ATF1 USF1 ZNF133 SIN3A FEZF1 SUZ12P1 ATAD5 RPS17P3 CRLF3 LOC101927093 LRRC37BP1 ENSG00000276250
GH17F030719 1.1 Ensembl ENCODE 11.3 -111.4 -111376 0.6 CBX3 ARNT ARID4B ZNF2 RAD21 YY1 ZNF121 ZNF143 SMARCA5 ZNF654 SUZ12P1 ATAD5 RPS17P3 ENSG00000279337 GC17P030711
GH17F031066 1.1 Ensembl ENCODE 10.8 +237.2 237172 2.3 TBP CTCF CBX3 JUN RAD21 ZNF121 GATA3 SMC3 NR2F6 FOS RAB11FIP4 ATAD5 RPS17P3 LOC101927093 LOC646030 MIR4733
GH17F031061 0.5 Ensembl 10.8 +231.0 231024 0.2 CTCF PRDM10 RAD21 ZBTB17 ATAD5 RPS17P3 LOC646030 MIR4733
GH17F030724 0.4 Ensembl 11.3 -106.5 -106477 0.4 ZNF548 ATAD5 TEFM ENSG00000264456 RPS17P3 DPRXP4 ENSG00000279337 GC17P030711
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS17P3 on UCSC Golden Path with GeneCards custom track

Promoters for RPS17P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001343935 1323 2001 HDGF ARNT MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143

Genomic Location for RPS17P3 Gene

Chromosome:
17
Start:
30,830,877 bp from pter
End:
30,831,360 bp from pter
Size:
484 bases
Orientation:
Plus strand

Genomic View for RPS17P3 Gene

Genes around RPS17P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS17P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS17P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS17P3 Gene

Proteins for RPS17P3 Gene

Post-translational modifications for RPS17P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS17P3 Gene

Domains & Families for RPS17P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS17P3 Gene

Function for RPS17P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS17P3 Gene

Localization for RPS17P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS17P3 Gene

Pathways & Interactions for RPS17P3 Gene

SuperPathways for RPS17P3 Gene

No Data Available

Interacting Proteins for RPS17P3 Gene

Gene Ontology (GO) - Biological Process for RPS17P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS17P3 Gene

Transcripts for RPS17P3 Gene

mRNA/cDNA for RPS17P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS17P3 Gene

No ASD Table

Relevant External Links for RPS17P3 Gene

GeneLoc Exon Structure for
RPS17P3
ECgene alternative splicing isoforms for
RPS17P3

Expression for RPS17P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS17P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS17P3 Gene:

RPS17P3
genes like me logo Genes that share expression patterns with RPS17P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS17P3 Gene

Orthologs for RPS17P3 Gene

Evolution for RPS17P3 Gene

ENSEMBL:
Gene Tree for RPS17P3 (if available)
TreeFam:
Gene Tree for RPS17P3 (if available)

No data available for Orthologs for RPS17P3 Gene

Paralogs for RPS17P3 Gene

No data available for Paralogs for RPS17P3 Gene

Variants for RPS17P3 Gene

Relevant External Links for RPS17P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS17P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS17P3 Gene

Disorders for RPS17P3 Gene

Relevant External Links for RPS17P3

Genetic Association Database (GAD)
RPS17P3
Human Genome Epidemiology (HuGE) Navigator
RPS17P3

No disorders were found for RPS17P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS17P3 Gene

Publications for RPS17P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. RNF135 mutations are not present in patients with Sotos syndrome-like features. (PMID: 19291764) Visser R. … Losekoot M. (Am. J. Med. Genet. A 2009) 3 46 64
  3. The transcriptionally active human ribosomal protein S17 gene. (PMID: 3240863) Chen I.-T. … Roufa D.J. (Gene 1988) 3 64
  4. Ribosomal protein gene sequences map to human chromosomes 5, 8, and 17. (PMID: 3459254) Nakamichi N.N. … Roufa D.J. (Somat. Cell Mol. Genet. 1986) 3 64

Products for RPS17P3 Gene

Sources for RPS17P3 Gene

Content
Loading form....