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Aliases for RPS17P2 Gene

Aliases for RPS17P2 Gene

  • Ribosomal Protein S17 Pseudogene 2 2 3 5
  • Ribosomal Protein S17a-Like 1 (Pseudogene) 2 3
  • Ribosomal Protein Pseudogene S17a 3
  • Ribosomal Protein S17-Like 1 3
  • RPS17_5_604 3
  • RPS17L1 3
  • RPS17A 3

External Ids for RPS17P2 Gene

Previous HGNC Symbols for RPS17P2 Gene

  • RPS17L1
  • RPS17A

Previous GeneCards Identifiers for RPS17P2 Gene

  • GC05U990048
  • GC05P116128
  • GC05P116079
  • GC05P111232

Summaries for RPS17P2 Gene

GeneCards Summary for RPS17P2 Gene

RPS17P2 (Ribosomal Protein S17 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS17P2 Gene

Genomics for RPS17P2 Gene

Regulatory Elements for RPS17P2 Gene

Enhancers for RPS17P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G116696 0.9 ENCODE 0.4 -19.6 -19593 0.5 ATF1 RAD21 RARA GATA2 CBX5 SCRT2 FOS RELB IKZF2 CREM SEMA6A SEMA6A-AS2 RPS17P2
GH05G116738 1 Ensembl ENCODE 0.3 +23.0 22967 1.9 FEZF1 ZFHX2 EGR1 ZSCAN5C SCRT2 ZBTB20 EGR2 L3MBTL2 BHLHE40 ZBTB8A LINC02214 RPS17P2
GH05G116709 0.7 ENCODE 0.4 -7.0 -6959 0.2 MTA2 NR2F1 GATAD2B DPF2 TBX21 ARID3A EED IKZF1 RELB MLLT1 RPS17P2 SEMA6A
GH05G116704 0.7 ENCODE 0.4 -11.4 -11385 0.8 MTA2 NR2F1 JUNB GATAD2B EBF1 ZBTB40 ARID3A EED IKZF1 NBN RPS17P2 SEMA6A
GH05G116671 0.9 ENCODE 0.3 -44.9 -44899 0.2 TBP TBL1XR1 WRNIP1 BMI1 ZNF48 YY1 CBX5 ZNF143 ZNF207 RELB RPS17P2 SEMA6A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS17P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS17P2 Gene

Chromosome:
5
Start:
116,716,218 bp from pter
End:
116,716,696 bp from pter
Size:
479 bases
Orientation:
Plus strand

Genomic View for RPS17P2 Gene

Genes around RPS17P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS17P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS17P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS17P2 Gene

Proteins for RPS17P2 Gene

Post-translational modifications for RPS17P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS17P2 Gene

Domains & Families for RPS17P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS17P2 Gene

Function for RPS17P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS17P2 Gene

Localization for RPS17P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS17P2 Gene

Pathways & Interactions for RPS17P2 Gene

SuperPathways for RPS17P2 Gene

No Data Available

Interacting Proteins for RPS17P2 Gene

Gene Ontology (GO) - Biological Process for RPS17P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS17P2 Gene

Drugs & Compounds for RPS17P2 Gene

No Compound Related Data Available

Transcripts for RPS17P2 Gene

mRNA/cDNA for RPS17P2 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS17P2 Gene

No ASD Table

Relevant External Links for RPS17P2 Gene

GeneLoc Exon Structure for
RPS17P2
ECgene alternative splicing isoforms for
RPS17P2

Expression for RPS17P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS17P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPS17P2 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).

Protein differential expression in normal tissues from HIPED for RPS17P2 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS17P2 Gene



Protein tissue co-expression partners for RPS17P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS17P2 Gene:

RPS17P2
genes like me logo Genes that share expression patterns with RPS17P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS17P2 Gene

Orthologs for RPS17P2 Gene

Evolution for RPS17P2 Gene

ENSEMBL:
Gene Tree for RPS17P2 (if available)
TreeFam:
Gene Tree for RPS17P2 (if available)

No data available for Orthologs for RPS17P2 Gene

Paralogs for RPS17P2 Gene

No data available for Paralogs for RPS17P2 Gene

Variants for RPS17P2 Gene

Relevant External Links for RPS17P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS17P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS17P2 Gene

Disorders for RPS17P2 Gene

Relevant External Links for RPS17P2

Genetic Association Database (GAD)
RPS17P2

No disorders were found for RPS17P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS17P2 Gene

Publications for RPS17P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. The transcriptionally active human ribosomal protein S17 gene. (PMID: 3240863) Chen I.-T. … Roufa D.J. (Gene 1988) 2 3 64
  3. Ribosomal protein gene sequences map to human chromosomes 5, 8, and 17. (PMID: 3459254) Nakamichi N.N. … Roufa D.J. (Somat. Cell Mol. Genet. 1986) 2 3 64
  4. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin E.J. … Vasan R.S. (BMC Med. Genet. 2007) 46 64
  5. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PMID: 17903298) Meigs J.B. … Dupuis J. (BMC Med. Genet. 2007) 46 64

Products for RPS17P2 Gene

Sources for RPS17P2 Gene

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