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RPS17P16 Gene(Pseudogene)

Ribosomal Protein S17 Pseudogene 16

GCID:
GC22P032039
GIFtS:
12
Genes Participants
UDN Logo

Aliases for RPS17P16 Gene

Aliases for RPS17P16 Gene

  • Ribosomal Protein S17 Pseudogene 16 2 3
  • RPS17_8_1748 3
  • Z74021.1 5

External Ids for RPS17P16 Gene

Previous GeneCards Identifiers for RPS17P16 Gene

  • GC22P030767
  • GC22P032436
  • GC22P032438
  • GC22P032446
  • GC22P032455

Summaries for RPS17P16 Gene

GeneCards Summary for RPS17P16 Gene

RPS17P16 (Ribosomal Protein S17 Pseudogene 16) is a Pseudogene.

Additional gene information for RPS17P16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS17P16 Gene

Genomics for RPS17P16 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPS17P16 Gene

Promoters and enhancers for RPS17P16 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22I032039 Enhancer 0.2 Ensembl 550.8 +0.2 236 0.2 RPS17P16 SLC5A1
GH22I031283 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 -750.4 -750362 10.5 PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 PIK3IP1 PIR44742 SFI1 RNU6-1128P RPS17P16 LINC01521 PATZ1 RNF185 LIMK2 SMTN
GH22I031340 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.5 -695.3 -695336 8.3 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B PATZ1 RPS17P16 SFI1 PIK3IP1 RNF185 LINC01521 PIR42273
GH22I032617 Enhancer 0.8 ENCODE dbSUPER 4.7 +577.0 576987 0.1 SOX5 SOX13 TFAP4 SP5 SMAD4 NR2F6 RAD21 ZNF48 RARA RPS17P16 GC22P032635 LOC105373003 SYN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS17P16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS17P16 Gene

Genomic Locations for RPS17P16 Gene
chr22:32,039,465-32,039,944
(GRCh38/hg38)
Size:
480 bases
Orientation:
Plus strand
chr22:32,435,452-32,435,952
(GRCh37/hg19)

Genomic View for RPS17P16 Gene

Genes around RPS17P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS17P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS17P16 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS17P16 Gene

Proteins for RPS17P16 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS17P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS17P16 Gene

Domains & Families for RPS17P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS17P16 Gene

Function for RPS17P16 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for RPS17P16 Gene

GenomeRNAi human phenotypes for RPS17P16:
genes like me logo Genes that share phenotypes with RPS17P16: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS17P16 Gene

Localization for RPS17P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS17P16 Gene

Pathways & Interactions for RPS17P16 Gene

SuperPathways for RPS17P16 Gene

PathCards logo More details on SuperPathways for RPS17P16
No Data Available

Interacting Proteins for RPS17P16 Gene

Gene Ontology (GO) - Biological Process for RPS17P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS17P16 Gene

Drugs & Compounds for RPS17P16 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS17P16 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS17P16 Gene

(1) REFSEQ mRNAs :
(49) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS17P16 Gene

No ASD Table

Relevant External Links for RPS17P16 Gene

GeneLoc Exon Structure for
RPS17P16
ECgene alternative splicing isoforms for
RPS17P16

Expression for RPS17P16 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS17P16 Gene

mRNA expression in normal human tissues for RPS17P16 Gene
mRNA expression by GTEx for RPS17P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS17P16 Gene:

RPS17P16
genes like me logo Genes that share expression patterns with RPS17P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS17P16 Gene

Orthologs for RPS17P16 Gene

Evolution for RPS17P16 Gene

ENSEMBL:
Gene Tree for RPS17P16 (if available)
TreeFam:
Gene Tree for RPS17P16 (if available)

No data available for Orthologs for RPS17P16 Gene

Paralogs for RPS17P16 Gene

No data available for Paralogs for RPS17P16 Gene

Variants for RPS17P16 Gene

Additional Variant Information for RPS17P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS17P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS17P16 Gene

Disorders for RPS17P16 Gene

No disorders were found for RPS17P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS17P16 Gene

Publications for RPS17P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. PAK4 promotes kinase-independent stabilization of RhoU to modulate cell adhesion. (PMID: 26598620) Dart AE … Wells CM (The Journal of cell biology 2015) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPS17P16 Gene

Sources for RPS17P16 Gene

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