RPS17P16 Gene
pseudogene GIFtS: 13
GCID: GC22P032455
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Ribosomal Protein S17 Pseudogene 16
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Aliases
for RPS17P16 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
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| Aliases |
|---|
| Ribosomal Protein S17 Pseudogene 161 2 | | RPS17_8_17482 |
Export aliases for RPS17P16 gene to outside databasesPrevious GC identifers: GC22P030767 GC22P032436 GC22P032438 GC22P032446 |
Summaries
for RPS17P16 gene(According to Entrez Gene,
GeneCards,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
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GeneCards Summary for RPS17P16 Gene:
RPS17P16 (ribosomal protein S17 pseudogene 16) is a pseudogene.
|
Genomic Views
for RPS17P16 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 75),
Regulatory elements and Epigenetics data according to
QIAGEN, and/or
SwitchGear Genomics)
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TryGeneCards Plus | Regulatory elements:
 Search for regulatory transcription factor binding sites for RPS17P16
Other transcription factors
Search Chromatin IP Primers for RPS17P16
Epigenetics:
| | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPS17P16 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 22q12.3 Ensembl cytogenetic band: 22q12.3 HGNC cytogenetic band: 22q12.3RPS17P16 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P032455: view genomic region
(about GC identifiers)
Start:
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32,435,452 bp from pter |
End:
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32,435,952 bp from pter |
Size:
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501 bases |
Orientation:
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plus strand |
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Proteins
for RPS17P16 gene
(According to
1UniProtKB,
HORDE,
2neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Antibodies by
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
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UniProtKB: --
|
Domains /
Families
for RPS17P16 gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
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Function
for RPS17P16 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
transcription factor targeting from QIAGEN
and/or HOMER,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
SwitchGear Genomics,
Gene Editing from DNA2.0,
Clones from OriGene,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
ESI BIO,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Animal Models:
Inhib. RNA
Products: |  | OriGene RNAi products in human, mouse, rat for RPS17P16
| | | Predesigned siRNA for gene silencing in human, mouse, rat RPS17P16 |
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for RPS17P16 | |  | Browse ESI BIO Cell Lines and PureStem Progenitors for RPS17P16  | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPS17P16 |
Localization
for RPS17P16 gene
(According to UniProtKB, COMPARTMENTS Subcellular localization database,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Pathways & Interactions
for RPS17P16 gene
(SuperPaths according to PathCards,
Pathways according to
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
QIAGEN,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene).
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Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RPS17P16
Interactions:
Search GeneGlobe Interaction Network for RPS17P16
|
Drugs & Compounds
for RPS17P16 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience,
ApexBio,
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB)
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 Browse compounds at ApexBio
 Browse Tocris compounds for RPS17P16
|
Transcripts
for RPS17P16 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
SwitchGear Genomics,
Tagged/untagged cDNA clones from
OriGene,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene, and/or
QIAGEN
)
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REFSEQ mRNAs for RPS17P16 gene: NM_001080499.1 1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000423610
Inhib. RNA
Products: | | OriGene RNAi products in human, mouse, rat for RPS17P16
| |
| | Predesigned siRNA for gene silencing in human, mouse, rat RPS17P16 |
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for RPS17P16
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RPS17P16 | | | QuantiTect SYBR Green Assays in human, mouse, rat RPS17P16 | | | QuantiFast Probe-based Assays in human, mouse, rat RPS17P16 |
Selected AceView cDNA sequences (see all 49): BG683639 AA229106 AA148075 F24638 CD386978 BE613290 CD386676 BF570229 N80772 BG476848 AA379388 AW591377 BG492252 AW157284 BX279735 BF372971 AA191448 BI084521 AW615494 CD176853 AW410183 BI822078 BG152735 AI525823
GeneLoc Exon Structure
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Expression
for RPS17P16 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MaxQB,
plus additional links to
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
QIAGEN,
Primers from
OriGene, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RPS17P16 expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
About this image RPS17P16 Protein expression data from MOPED1, PaxDb2 and
MaxQB3:  --
Custom PCR Arrays for RPS17P16
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for RPS17P16
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RPS17P16 | | | QuantiTect SYBR Green Assays in human, mouse, rat RPS17P16 | | | QuantiFast Probe-based Assays in human, mouse, rat RPS17P16 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPS17P16 |
Orthologs
for RPS17P16 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
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--
ENSEMBL Gene Tree for RPS17P16 (if available)
TreeFam Gene Tree for RPS17P16 (if available) |
Paralogs
for RPS17P16 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Genomic Variants
for RPS17P16 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD), the Human Cytochrome P450 Allele
Nomenclature Database, and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section
TryGeneCards Plus | | | Site Specific Mutation Identification with PCR Assays |
|
Disorders
/ Diseases
for RPS17P16 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
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Publications
for RPS17P16 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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PubMed articles for RPS17P16 gene integrated from 10 sources:
(articles sorted by number of sources associating them with RPS17P16) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PubMed id 19123937)1, 3 Balasubramanian S....Gerstein M. (Genome Biol. 2009)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
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External Searches for RPS17P16 gene (in PubMed,
OMIM, and NCBI Bookshelf)
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Genome Databases showing RPS17P16 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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|
Other Databases showing RPS17P16 gene
(According to HUGE)
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Specialized Databases showing RPS17P16 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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TryGeneCards Plus | Patent Information for RPS17P16 gene:
Search GeneIP for patents involving RPS17P16
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RPS17P16 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or
ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
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|  | Block miRNA regulation of human, mouse, rat RPS17P16 using miScript Target Protectors | | SeqTarget long-range PCR primers for resequencing RPS17P16 | | | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPS17P16 | | Predesigned siRNA for gene silencing in human, mouse, rat RPS17P16 | | | QuantiFast Probe-based Assays in human, mouse, rat RPS17P16 | | QuantiTect SYBR Green Assays in human, mouse, rat RPS17P16 | | | Custom PCR Arrays for RPS17P16 | | Search Chromatin IP Primers for RPS17P16 | | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RPS17P16 | | Search GeneGlobe Interaction Network for RPS17P16 | | | Search Regulatory tfbs for RPS17P16 |
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 |  | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPS17P16 |
| |  |  |  |  | | | Search ThermoFisher Antibodies for RPS17P16 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RPS17P16 |
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