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RPS17 Gene(Protein Coding)

Ribosomal Protein S17

GCID:
GC15M082536
GIFtS:
59
Genes Participants
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Aliases for RPS17 Gene

Aliases for RPS17 Gene

  • Ribosomal Protein S17 2 3 5
  • RPS17L 3 4
  • Ribosomal Protein S17-Like 2
  • RPS17L1 3
  • RPS17L2 3
  • DBA4 3
  • S17 3

External Ids for RPS17 Gene

Previous HGNC Symbols for RPS17 Gene

  • RPS17L

Previous GeneCards Identifiers for RPS17 Gene

  • GC15M079008
  • GC15M076138
  • GC15M080395
  • GC15M080536
  • GC15M080608
  • GC15M082821
  • GC15M059476

Summaries for RPS17 Gene

Entrez Gene Summary for RPS17 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of four RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S17E family of ribosomal proteins and is located in the cytoplasm. Mutations in this gene cause Diamond-Blackfan anemia 4. Alternative splicing of this gene results in multiple transcript variants. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Apr 2014]

GeneCards Summary for RPS17 Gene

RPS17 (Ribosomal Protein S17) is a Protein Coding gene. Diseases associated with RPS17 include Diamond-Blackfan Anemia 4 and Diamond-Blackfan Anemia. Among its related pathways are Viral mRNA Translation and Influenza Viral RNA Transcription and Replication. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPS17 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS17 Gene

Genomics for RPS17 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RPS17 Gene

Enhancers for RPS17 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RPS17 on UCSC Golden Path with GeneCards custom track

Promoters for RPS17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPS17 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the RPS17 gene promoter:

Genomic Location for RPS17 Gene

Chromosome:
15
Start:
82,536,750 bp from pter
End:
82,540,564 bp from pter
Size:
3,815 bases
Orientation:
Minus strand

Genomic View for RPS17 Gene

Genes around RPS17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS17 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS17 Gene

Proteins for RPS17 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for RPS17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P08708-RS17_HUMAN
    Recommended name:
    40S ribosomal protein S17
    Protein Accession:
    P08708
    Secondary Accessions:
    • B2R4U4
    • P0CW22

    Protein attributes for RPS17 Gene

    Size:
    135 amino acids
    Molecular mass:
    15550 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPS17 Gene

neXtProt entry for RPS17 Gene

Proteomics data for RPS17 Gene at MOPED

Protein Expression for RPS17 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for RPS17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RPS17 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RPS17 Gene

Domains & Families for RPS17 Gene

Gene Families for RPS17 Gene

HGNC:

Protein Domains for RPS17 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RPS17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P08708

UniProtKB/Swiss-Prot:

RS17_HUMAN :
  • Belongs to the ribosomal protein S17e family.
Family:
  • Belongs to the ribosomal protein S17e family.
genes like me logo Genes that share domains with RPS17: view

Function for RPS17 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for RPS17 Gene

GENATLAS Biochemistry:
40S ribosomal protein S17,15kDa

Phenotypes for RPS17 Gene

GenomeRNAi human phenotypes for RPS17:
genes like me logo Genes that share phenotypes with RPS17: view

Human Phenotype Ontology for RPS17 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

miRNA for RPS17 Gene

miRTarBase miRNAs that target RPS17

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for RPS17 Gene

Localization for RPS17 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPS17 Gene COMPARTMENTS Subcellular localization image for RPS17 gene
Compartment Confidence
cytosol 5
extracellular 5
nucleus 1

Gene Ontology (GO) - Cellular Components for RPS17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005925 focal adhesion IDA 21423176
GO:0016020 membrane IDA 19946888
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with RPS17: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPS17 Gene

Pathways & Interactions for RPS17 Gene

SuperPathways for RPS17 Gene

PathCards logoMore details on SuperPathways for RPS17
Superpath Contained pathways
1 Viral mRNA Translation
Cap-dependent Translation Initiation
.94
Eukaryotic Translation Elongation
.94
Eukaryotic Translation Initiation
.94
GTP hydrolysis and joining of the 60S ribosomal subunit
.94
Peptide chain elongation
.94
L13a-mediated translational silencing of Ceruloplasmin expression
.93
Eukaryotic Translation Termination
.92
Selenocysteine synthesis
.92
Viral mRNA Translation
.92
Formation of a pool of free 40S subunits
.91
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
.91
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
.84
Nonsense-Mediated Decay (NMD)
.84
CFTR translational fidelity (class I mutations)
.82
Selenoamino acid metabolism
.79
Translation
.76
SRP-dependent cotranslational protein targeting to membrane
.75
Cytoplasmic Ribosomal Proteins
.66
Ribosome
.60
Metabolism of amino acids and derivatives
.33
2 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
Formation of the ternary complex, and subsequently, the 43S complex
.88
Ribosomal scanning and start codon recognition
.88
Translation initiation complex formation
.88
Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
.87
3 Influenza Viral RNA Transcription and Replication
Influenza Life Cycle
.94
Influenza Viral RNA Transcription and Replication
.94
Influenza Infection
.93
4 Infectious disease
Infectious disease
.64
Disease
.48
5 rRNA processing
Major pathway of rRNA processing in the nucleolus
.92
rRNA processing
.92
genes like me logo Genes that share pathways with RPS17: view

Gene Ontology (GO) - Biological Process for RPS17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006364 rRNA processing IMP,TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
GO:0006415 translational termination TAS --
genes like me logo Genes that share ontologies with RPS17: view

No data available for SIGNOR curated interactions for RPS17 Gene

Drugs & Compounds for RPS17 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS17 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RPS17 Gene

(2) REFSEQ mRNAs :
(2925) Selected AceView cDNA sequences:
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS17 Gene

No ASD Table

Relevant External Links for RPS17 Gene

GeneLoc Exon Structure for
RPS17
ECgene alternative splicing isoforms for
RPS17

Expression for RPS17 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for RPS17 Gene

mRNA expression in normal human tissues for RPS17 Gene
mRNA expression by BioGPS for RPS17 GenemRNA expression by GTEx for RPS17 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RPS17 Gene

This gene is overexpressed in Pancreas (21.3), Lung (14.3), and Nasal epithelium (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RPS17 Gene



genes like me logo Genes that share expression patterns with RPS17: view

Protein tissue co-expression partners for RPS17 Gene

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPS17 Gene

Orthologs for RPS17 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS17 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia RPS17 35
  • 90.62 (n)
  • 98.52 (a)
RPS17 36
  • 99 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia RPS17 35
  • 89.14 (n)
  • 99.26 (a)
-- 36
  • 91 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Rps17 35
  • 89.14 (n)
  • 99.26 (a)
Rps17 16
Rps17 36
  • 99 (a)
 OneToMany
chimpanzee
(Pan troglodytes)
 Mammalia RPS17 35
  • 96.54 (n)
  • 96.3 (a)
-- 36
  • 100 (a)
 OneToMany
oppossum
(Monodelphis domestica)
 Mammalia -- 36
  • 96 (a)
 OneToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 36
  • 99 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves RPS17L 35
  • 83.95 (n)
  • 98.52 (a)
RPS17 36
  • 98 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia -- 36
  • 99 (a)
 OneToMany
tropical clawed frog
(Silurana tropicalis)
 Amphibia rps17 35
  • 83.21 (n)
  • 99.26 (a)
Str.6800 35
African clawed frog
(Xenopus laevis)
 Amphibia Xl.8337 35
zebrafish
(Danio rerio)
 Actinopterygii zgc:114188 35
  • 82.96 (n)
  • 98.5 (a)
RPS17L 36
  • 98 (a)
 OneToMany
fruit fly
(Drosophila melanogaster)
 Insecta RpS17 37
  • 79 (a)
RpS17 36
  • 77 (a)
 OneToMany
worm
(Caenorhabditis elegans)
 Secernentea rps-17 37
  • 71 (a)
rps-17 35
  • 69.49 (n)
  • 73.73 (a)
rps-17 36
  • 69 (a)
 OneToMany
A. gosspyii yeast
(Ashbya gossypii)
 Saccharomycetes AGOS_AER319W 35
  • 65.75 (n)
  • 69.72 (a)
K. lactis yeast
(Kluyveromyces lactis)
 Saccharomycetes KLLA0B01474g 35
  • 66.06 (n)
  • 69.72 (a)
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes RPS17A 35
  • 63.61 (n)
  • 69.72 (a)
RPS17A 36
  • 57 (a)
 ManyToMany
RPS17B 36
  • 57 (a)
 ManyToMany
RPS17B 38
thale cress
(Arabidopsis thaliana)
 eudicotyledons AT2G05220 35
  • 58.2 (n)
  • 62.7 (a)
rice
(Oryza sativa)
 Liliopsida Os.46371 35
Os03g0109500 35
  • 61.16 (n)
  • 64.46 (a)
wheat
(Triticum aestivum)
 Liliopsida Ta.22649 35
sea squirt
(Ciona intestinalis)
 Ascidiacea Cin.14632 35
bread mold
(Neurospora crassa)
 Ascomycetes NCU07014 35
  • 69.59 (n)
  • 74.56 (a)
fission yeast
(Schizosaccharomyces pombe)
 Schizosaccharomycetes rps1701 35
  • 62.87 (n)
  • 71.05 (a)
Species with no ortholog for RPS17:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPS17 Gene

ENSEMBL:
Gene Tree for RPS17 (if available)
TreeFam:
Gene Tree for RPS17 (if available)

Paralogs for RPS17 Gene

(2) SIMAP similar genes for RPS17 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RPS17: view

No data available for Paralogs for RPS17 Gene

Variants for RPS17 Gene

Sequence variations from dbSNP and Humsavar for RPS17 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
VAR_034478 -
rs6991 -- 82,538,982(-) AGTTA(C/G/T)GTCAC nc-transcript-variant, reference, synonymous-codon, stop-gained
rs810682 -- 82,542,193(-) GCCAG(A/C)ctggg upstream-variant-2KB
rs919417 -- 82,539,015(+) GAACA(A/G)TGAGA intron-variant
rs1267660 -- 82,541,602(-) aaaaa(A/C)aaaaa upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPS17 Gene

Variant ID Type Subtype PubMed ID
nsv904446 CNV Gain 21882294
nsv510669 CNV Loss 20534489
esv33165 CNV Loss 17666407
esv21531 CNV Gain+Loss 19812545
nsv9285 CNV Gain+Loss 18304495
nsv428309 CNV Gain 18775914
dgv763e1 CNV Complex 17122850
dgv764e1 CNV Complex 17122850
nsv469699 CNV Complex 16826518
nsv471686 CNV Gain+Loss 15918152
esv22027 CNV Gain+Loss 19812545
nsv483125 CNV Loss 15286789
nsv833071 CNV Gain 17160897

Relevant External Links for RPS17 Gene

Human Gene Mutation Database (HGMD)
RPS17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS17 Gene

Disorders for RPS17 Gene

MalaCards: The human disease database

(20) MalaCards diseases for RPS17 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
diamond-blackfan anemia 4
  • dba4
diamond-blackfan anemia
  • blackfan - diamond syndrome
rps17-related diamond-blackfan anemia
  • diamond-blackfan anemia 4
macrocytic anemia
  • anemia macrocytic
diaphragm disease
  • disease of diaphragm
- elite association - COSMIC cancer census association via MalaCards
Search RPS17 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

RS17_HUMAN
  • Diamond-Blackfan anemia 4 (DBA4) [MIM:612527]: A form of Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy. Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an increased risk of developing leukemia. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital anomalies. {ECO:0000269 PubMed:17647292, ECO:0000269 PubMed:19061985}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for RPS17

Genetic Association Database (GAD)
RPS17
Human Genome Epidemiology (HuGE) Navigator
RPS17
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS17
genes like me logo Genes that share disorders with RPS17: view

No data available for Genatlas for RPS17 Gene

Publications for RPS17 Gene

  1. [Mapping the genes for ribosomal proteins S14 and S17 on human chromosomes using cDNA from a panel of hybrid cells]. (PMID: 7661859) Filipenko M.L. … Mertvetsov N.P. (Bioorg. Khim. 1995) 2 3 23 67
  2. Rapamycin-sensitive phosphorylation of ribosomal protein S17 by p70 S6 kinase. (PMID: 8878544) Patel H.R. … Gelfand E.W. (Biochem. Biophys. Res. Commun. 1996) 3 23
  3. The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome. (PMID: 1577483) Feo S. … Fried M. (Genomics 1992) 2 3
  4. Reversible oxidation of phosphatase and tensin homolog (PTEN) alters its interactions with signaling and regulatory proteins. (PMID: 26561776) Verrastro I. … Pitt A.R. (Free Radic. Biol. Med. 2016) 3
  5. DNA damage shifts circadian clock time via Hausp-dependent Cry1 stabilization. (PMID: 25756610) Papp S.J. … Lamia K.A. (Elife 2015) 3

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