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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

RPS17 Gene

protein-coding   GIFtS: 61
GCID: GC15M082821

ribosomal protein S17

 Explore 13 diseases affiliated with
RPS17 via our new
 Human Malady Compendium 
Biological research products
for RPS17
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Ribosomal Protein S171 2     DBA42 5
RPS17L11 2 5     MGC720071
RPS17L21 2 5     40S Ribosomal Protein S172
S171 2     RPS17L2

External Ids:    HGNC: 103971   Entrez Gene: 62182   Ensembl: ENSG000001847797   OMIM: 1804725   UniProtKB: P087083   

Export aliases for RPS17 gene to outside databases

Previous GC identifers: GC15M079008 GC15M076138 GC15M080395 GC15M080536 GC15M080608 GC15M059476


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for RPS17:
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit.
Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene
encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S17E family of
ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are
multiple processed pseudogenes of this gene dispersed through the genome. (provided by RefSeq, Jul 2008)

Gene Wiki entry for RPS17


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the RPS17 gene promoter:
         COUP-TF1   COUP   HNF-4alpha2   E4BP4   HNF-4alpha1   HNF-1A   S8   COUP-TF   HNF-1   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRPS17 promoter sequence
   Search SABiosciences Chromatin IP Primers for RPS17

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RPS17


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q   Ensembl cytogenetic band:  15q25.2   HGNC cytogenetic band: 15q

RPS17 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RPS17 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M082821:  view genomic region     (about GC identifiers)

Start:
82,821,158 bp from pter      End:
82,824,972 bp from pter
Size:
3,815 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: RS17_HUMAN, P08708 (See protein sequence)
Recommended Name: 40S ribosomal protein S17  
Size: 135 amino acids; 15550 Da
Secondary accessions: B2R4U4

Explore the universe of human proteins at neXtProt for RPS17: NX_P08708

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P08708

  • RPS17 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_001012.1  
    ENSEMBL proteins: 
     ENSP00000346045   ENSP00000453564   ENSP00000452655   ENSP00000452696  
    Reactome Protein details: P08708
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    Uscn Proteins for RPS17

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005829cytosol TAS--
    GO:0005840ribosome NAS3240863
    GO:0022627cytosolic small ribosomal subunit ISS--


    RPS17 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for RPS17


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    RPS17 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR018273 Ribosomal_S17e_CS
     IPR001210 Ribosomal_S17e

    Graphical View of Domain Structure for InterPro Entry P08708

    ProtoNet protein and cluster: P08708

    1 Blocks protein family: IPB001210 Ribosomal protein S17e

    UniProtKB/Swiss-Prot: RS17_HUMAN, P08708
    Similarity: Belongs to the ribosomal protein S17e family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:
         Genatlas biochemistry entry for RPS17:
    40S ribosomal protein S17,15kDa

    miRNA
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    Inhib. RNA
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003735structural constituent of ribosome NAS17647292


    RPS17 for ontologies           About GeneDecksing


    4 GenomeRNAi human phenotypes for RPS17:
     Cytoplasmic 40S maturation def  Decreased viability  Increased S DNA content  Nucleolar pre-40S maturation d 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Synthesis of PB1-F2
    8/26 pathways (see all 26)
    Viral Protein Synthesis1.00
    Cytoplasmic Ribosomal Proteins0.86
    Viral mRNA Translation1.00
    CFTR translational fidelity (class I mutations)0.83
    Influenza Viral RNA Transcription and Replication1.00
    SMG6 Cleaves mRNA with Premature Termination Codon0.80
    Synthesis of nascent polypeptide containing signal sequence1.00
    L13a-mediated translational silencing of Ceruloplasmin expression0.79
    2Translation initiation complex formation
    Translation initiation complex formation1.00
    Ribosomal scanning and start codon recognition0.96
    Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S0.98
    Formation of the ternary complex, and subsequently, the 43S complex0.87
    3Metabolism of mRNA
    Metabolism of mRNA1.00
    Metabolism of RNA0.92
    4Disease
    Disease1.00
    5Generic Transcription Pathway
    Gene Expression0.46

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    1 GeneGo (Thomson Reuters) Pathway for RPS17
        CFTR translational fidelity (class I mutations)

    1 BioSystems Pathway for RPS17 
        Cytoplasmic Ribosomal Proteins

    5/32        Reactome Pathways for RPS17 (see all 32)
        Formation of a pool of free 40S subunits
    Synthesis of PB1-F2
    SMG6 Cleaves mRNA with Premature Termination Codon
    Influenza Life Cycle
    Viral mRNA Translation


    1         Kegg Pathway  (Kegg details for RPS17):
        Ribosome


    RPS17 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RPS17

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/258 Interacting proteins for RPS17 (P087082, 3 ENSP000003460454) via UniProtKB, MINT, STRING, and/or I2D (see all 258)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RPS16P622492, 3, ENSP000002514534MINT-8044024 I2D: score=1 STRING: ENSP00000251453
    MAP3K14Q995582, 3MINT-48887 I2D: score=2 
    RPS26P628542, 3MINT-8044024 I2D: score=1 
    RPL17P186213, ENSP000003894654I2D: score=1 STRING: ENSP00000389465
    RPS14P622632, 3, ENSP000003110284MINT-8044024 I2D: score=2 STRING: ENSP00000311028
    About this table

    Gene Ontology (GO): 5/17 biological process terms (GO ID links to tree view) (see all 17):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000028ribosomal small subunit assembly ISS--
    GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS--
    GO:0006364rRNA processing IMP18697920
    GO:0006412translation TAS--
    GO:0006413translational initiation TAS--


    RPS17 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for RPS17
    Search CenterWatch for drugs/clinical trials and news about RPS17 / RS17 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for RPS17 gene: 
    NM_001021.3  

    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000330339(uc002bhr.1 uc021ssu.1) ENST00000560151 ENST00000559187
    ENST00000560826 ENST00000560977 ENST00000559636 ENST00000560084 ENST00000560652
    ENST00000559854 ENST00000560024

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    Inhib. RNA
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    2925 AceView cDNA sequences (see top 24):

    BF475644 BM841150 BG824782 BE391134 BQ678752 F27701 BQ675511 BE277421 
    BQ954838 BQ130567 AW512342 BM760477 BQ942781 AA135090 AA852123 BG472362 
    BE295330 BU175479 BM051340 BG818710 BM512300 BM772297 BQ949090 BE256535 
    BF219696 BE385915 BQ894297 BG341437 BQ691933 BQ954231 W81391 BQ054079 
    CB114289 CD675690 AL524753 BM760610 AJ713354 BF974836 BQ685965 F19463 
    AA159814 BE394814 BE796626 BE905890 F22298 BG478350 BU848870 BX374654 
    CB143996 BG827275 BE873949 BG478391 BF794386 BU163779 BE407171 BG489964 
    BU931914 BE902756 BG333219 AW081847 BE383859 BG755337 AA372872 BE384845 
    BF182785 BQ069053 BM841504 BE256639 BE280040 BM424194 BX391083 AA321583 
    CN484678 BE796548 BQ933150 BQ939557 BG756848 AV655759 BE277953 AI658674 
    BM450191 AI826436 BE881893 AW768245 BQ687303 BQ130821 BE563749 AI431296 
    AI688985 CR602312 BF976176 BG684735 BG025346 BC009407 AI419450 BF683784 
    AI499430 T58433 BQ962750 CA389959 CD673686 BQ669873 BI335815 W44918 
    BE273502 BQ421161 BG110526 F32131 BG753758 BI599988 BF036643 AJ712486 
    BE302689 AA687779 BF128903 BF664393 BG685640 BQ420566 BU160699 BU185890 
    NM_001021 BM550456 BM841177 BU943511 BQ924757 CB130753 BQ653023 AW732814 
    N95257 CK905078 BU150079 BQ228784 BM785473 BG756701 BM913147 BU165544 
    BU789620 CB140079 AL515643 BQ073769 BQ787506 BE394739 AV701678 BG341413 
    BM762335 BF568214 BE407286 BE301795 BM661881 AA612897 BU856594 BG758081 
    BU159247 BM011083 BG769006 F35128 BF205868 BM911798 BQ880115 BE906991 
    BM801762 CB133148 BG827693 BF971774 BG331698 BM830301 BE258343 BM552555 
    BQ954027 BM841857 BM764388 CB117997 BM809315 BU176015 BM841024 BG489554 
    BM852080 BG755484 BG829929 BM761761 BE729559 BQ926152 BM990526 BU540718 
    BU789551 BU190372 BG283491 AW117871 BM766970 AI707578 BQ688569 BQ898885 
    BX349453 CF619103 CN483079 AW105259 BM760628 BG755344 BG490110 CB109597 
    F35543 BM556569 BM841739 BG478307 BU153629 BI333948 BU737909 BE903086 
    AI685870 CR618328 F30937 BG116104 CB142512 CD675171 BF309430 BM759105 
    AV655777 BG760610 AV712492 BE276321 BM841260 BG774758 BG248398 AW732811 
    BQ942805 AA327346 BC071928 BG437682 BE742486 BQ954229 BM008726 BU855666 
    BQ425599 BU154735 BQ279030 BG398455 F25924 BQ680766 BU522020 AI199060 
    BM700111 BU529097 CB117969 CD679476 BE295613 BM740689 AJ713878 AA308283 
    BU781597 BQ877894 BF663470 CR616208 AA329450 BQ952653 AI431617 F21567 
    AW675793 BG330942 AA468610 F35607 BM840591 BG683278 BG754429 BM010080 
    F26786 BE294653 BM693718 BQ927052 AA343969 BG754334 AA339981 BU179425 
    BM773282 CR595559 BQ918714 BQ683592 BC049824 BU190528 BE298525 CR609691 
    CN484802 BI493340 BM012797 BI195741 BU948228 BE311589 BM755562 BG757851 
    AA661584 BM465031 AA296571 BU152848 AA583102 AJ710727 AA303775 BM760276 
    BQ681767 BC062715 BE389686 BE294800 BG338952 BC020453 BQ231150 BF794220 
    BE901795 BG767794 BE257074 AA112000 BU175826 CB109632 AA187482 BQ684363 
    AA357036 BG829894 BU930906 BQ876958 BI857211 BG757919 BM787368 CB109224 
    AW160429 BQ051596 CD105907 BI197301 BI254651 AW602582 CB155166 BM888403 
    T54312 CB265752 BE312108 BE296099 BG025256 BI194360 CD105295 BG422230 
    BE893362 BM788251 BQ070359 AW163296 BF795910 BE901871 BM853852 BF727297 
    CB113570 BE266126 AI685465 BE250270 BM845597 AJ714240 BM853425 AW850714 
    BM761843 BG684073 BQ436185 BE273924 BM788133 CR615408 BI083853 BU071413 
    BF206114 BG756563 AA301936 CD107662 AW732907 CB117446 BE263207 F26559 
    BP429843 AA181031 BQ949354 AW085555 BG758868 BM856092 BE256918 BQ899097 
    BU162681 CB121816 AI770149 BM907968 BU177959 BM008913 BQ640191 AA984956 
    BG436757 BM760606 BE276653 BQ682981 CF129105 AI804322 AI685482 CR612555 
    BM841490 BG686856 BF663516 BQ072200 BM809670 BQ688164 BQ636665 BU859235 
    BG477805 BM556313 BF683781 BM773168 BQ440363 AA301001 BG490655 AW088896 
    N29382 AA306145 BG686915 BC019899 BU789131 BE386715 BE279484 BF663531 
    BU854822 BU164064 BE389594 BG335765 BE390384 BU787660 BG756255 CB111704 
    BU687786 AJ713716 BF973254 BM557192 BQ679779 BE389882 BU153351 BE270134 
    BG281205 BG397571 F24193 AI826747 AA583869 BM551200 BG770424 BG754205 
    BG164256 BQ959691 CR618357 AI818016 BM918016 BQ949434 AA371531 BG291467 
    AI424764 BE407190 BU845076 BE018962 BQ682440 BM841531 AW197160 AW327844 
    BE259635 BQ689486 AA100259 BE277510 BQ961732 CB117222 BU539343 BG291221 
    BM840206 BG756588 BG769557 BQ278109 AA102562 BQ653100 BF307509 BG542472 
    BE251759 BF975864 BM552902 AA378477 BE255327 CA455386 BF685207 CD522366 
    BQ278062 BQ054525 H87125 BQ066007 BE274112 BQ053299 BU071649 BM555561 
    F30874 BG335017 AA342566 BE785152 AW673473 BM840462 BF663979 BG397456 
    BM048682 BU860449 BG326673 BM017772 BI859473 BP428631 AW160442 BQ681405 
    BM810049 BM760547 BM018342 BX328900 BG340825 BI085304 BG754291 BQ272361 
    BG473849 BM511068 BQ918461 AA307349 F36590 AJ712029 BG335377 BM554422 
    BF313437 BG775064 BM555152 BG756791 BM466987 AW081654 BM010142 AI350773 
    BM010554 BG756397 BG489798 BE562876 BE901664 BG334741 BF207149 BG758588 
    BE300493 BQ708048 BM555661 BF976378 BE292859 BG757163 BU851971 BG611033 
    BE898701 BM503932 BE736000 BQ069684 BQ061975 BG759476 AA659658 BF689560 
    AI810776 F29135 BE255559 BG942210 BQ065179 BM810092 BG398494 BM852154 
    BG821401 BG751102 BQ681769 BG034163 BE900873 AJ714639 BI908397 BQ934104 
    BE263126 BE385936 BQ217535 BG825536 BM046083 AI735507 BG757749 AI680658 
    BG474935 CB109921 BG475141 BE312748 BI093437 BM008925 BM554008 BG329936 
    BQ055989 BG034521 F19712 BE122688 CB117869 BE388873 BG766562 AL521076 
    BF974597 BG333270 BF973334 BM841510 BF237834 BM018499 BU956083 F21551 
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    CB114025 BQ686794 BG397919 CD386906 BG152976 BI334307 BU589475 AV742844 
    CD247131 CD174001 CD174853 AA319418 BG702201 BG470557 BE559621 BF206334 
    T03919 CD247077 F22457 CD389335 CD385098 D57028 AV756790 BU540242 
    CD386222 CD386113 BU596245 BU175446 BE298317 CD555936 AA507515 AA552791 
    CD385141 CD387851 BE901261 CD386841 BU854721 CD175338 CD386902 BE267729 
    AA653883 CD177347 AA617717 CD386328 AA469328 CD387138 CD386267 CD175637 
    CD176169 CF995300 CD177436 BP379754 BE280064 CD246901 CD177248 BM469152 
    BE260668 CD248230 CD385402 CD177596 AA320906 CD386922 CD249555 AI266116 
    AA092967 BG480189 BI599193 CD175432 BM834066 CD387675 BE384629 AA135228 
    AI351130 BU500913 CD175207 BE838492 BM557478 CD386334 BI910335 BE385271 
    BQ896074 CD556369 CD175380 CD385166 CD385274 CD246661 BM824316 CD177498 
    CD175331 CD177268 BQ057782 BF203644 AA146887 CD176060 CD247195 CD556077 
    CD246863 BF381574 AA155895 CD388505 CD389646 CD387086 BQ222096 CD173243 
    BF026478 AA661561 AI682182 BQ650693 BE735674 BE877510 BE409225 BM801614 
    AA558745 CD385680 CD390267 BQ049993 CD384949 AA533415 BF699208 BQ057604 
    F33904 AJ710241 AI253523 AV739971 CD174646 BE515043 AA592972 AA935024 
    AI306144 BQ028635 CD388470 BE771995 BE395977 BF684723 CD250341 D56973 
    CD385623 BG900787 AI869198 CD174594 AI907724 CD248329 CD384845 AA316346 
    AJ715169 CD248623 BI818877 CD174677 AA306390 CD172642 BE838488 CD387331 
    CD389177 BP872245 CD388699 BE771972 BG106827 CD173544 CD174265 AA297897 
    CD247294 CD174119 CD174583 AA187090 AA873657 BG034564 CD173618 BE094055 
    AA879172 BG616267 BG755153 AA630907 BI481321 CF123501 CD387671 AA339893 
    BQ372957 AA091567 CD174040 CD176365 AA167246 CD387891 CD389306 BM790466 
    CD387188 BG490890 BG684974 BQ957824 BI254913 CF780521 CD173119 AW970048 
    BG519798 CD175268 CF124078 CD173038 CD556029 BU565550 BG491765 AI762814 
    BF173357 AV759671 CD389218 CD172854 N84542 CD386193 CD386867 AA385226 
    AA186859 AA559338 D20891 CD386606 BE789283 BG397502 AA031755 CD249867 
    CD385345 BU589447 CD386892 CD174289 BF245836 CD176170 F23549 BU596477 
    BM557487 AA155866 BG177262 BI600916 CD249636 CD386123 BE731993 BE274058 
    CD386124 AA559228 CD176503 CD390171 CD388365 BE301354 BM554039 CD386844 
    CD174936 CD174068 CD388968 BE531167 BQ918246 CD176481 CD105463 AA744281 
    CD388129 CA337527 CD249934 BE734969 BM562505 BI868428 CD173981 BE407613 
    BG340334 W24027 AA492433 BI906390 BF792115 BU860732 BE881077 BQ372958 
    AA630994 BG488849 BE408339 BI193703 BE771973 BG291004 AW572649 T28929 
    AI580754 AW089727 CD177323 AA318965 BE731975 AU099768 AV706474 BU596809 
    BU955139 BU854538 AA778088 CB997602 BX401763 CD388227 CD384972 BM465855 
    BG769588 AA962607 BF819101 BV202674 CB107273 BF683287 BU935079 BF127417 
    BG332910 W24496 BQ439011 N85467 CD389188 BG190344 BF663475 BE407588 
    D55082 C14003 D19803 BE298213 AA579446 BG686040 W39565 BU598352 
    AA578457 BF684907 BF025699 BF240209 BU599539 BG531612 BE091153 BG396710 
    BF690059 CK128652 BQ421793 BE818745 AA569712 CD248086 BU603397 BI093590 
    BE513471 F28377 AV760421 BU537672 BI457711 BG755790 AW103787 BM912236 
    AA552867 BQ440614 AA320859 BI521261 CA338086 BF244424 T55816 D52611 
    CD175004 AA491897 BQ421744 BE545831 AA938479 AJ705161 BP870813 BG502735 
    H87136 CD175371 BG611061 CD388109 BE731594 CD247000 AA558292 AA834715 
    BF222006 BF476541 AA903378 AW392185 CD386223 AA301805 AW275163 BM825263 
    D17278 BU566016 AA557832 BG475391 AA090578 BE905390 AI284582 AA947382 
    CD177629 BG424131 BM463542 AA569454 BM793748 AA603253 AA327939 N85429 
    AW583000 BG878452 AA559946 BE301376 BE729651 BG281659 BE271834 BG831406 
    CD387087 BG330821 AV764466 AI582473 BI257148 AV715580 BF241440 BG107475 
    BU599263 BU960442 BG339822 BG339748 CD177366 BE386897 BG760073 BG765090 
    BG387098 BG024742 BF104109 BF664287 BG473593 BE694784 AA747156 BE880653 
    BM465151 AW674251 BG394696 BG779740 BG682179 CD177654 BG753659 AA635747 
    BI856924 AA096069 AA094178 BG766552 BG335384 BQ312017 AV711696 BG341517 
    BG491548 BE275175 BG437587 CD173273 BI089254 BG831674 BE278723 AI220666 
    AV698400 BF791682 BE390840 CD387196 CD246308 BI856536 BM797671 BE818739 
    BF976579 BI856118 BE731089 BQ278513 BF103905 AA658859 BM912937 BG033132 
    BF182827 BG281793 BG341051 BF664186 BG397603 AV705648 BF209648 BE615422 
    BI822826 BG031308 AI440310 BG169951 CD388346 BG332480 BI763497 BI087505 
    BU941298 BF311336 BI754918 BE789883 BF980991 CF124909 BG114990 BG758907 
    BE265734 BF797828 BE746686 AV736787 BM914962 BE744562 BE409226 BE379113 
    BG686171 BF308295 BX399590 BF699947 H94369 BE271774 BG387102 BG469819 
    BG474699 AA304646 BM841668 BG478080 BG533661 BG472703 BF975552 BG501224 
    BF976060 BG613492 CD389986 BE313309 CD388035 BI762604 BF663558 BE276650 
    BF312601 BE383933 CA748848 AA662567 BG281237 BE280680 BE731291 BG331902 
    BG398181 AA559907 BG774725 BG119329 BI759836 BI199658 BU959868 BG762446 
    BG481014 BE732348 BE271477 BI029521 BU564237 CD174356 AV760907 BI198479 
    BG290072 BG282705 BF128734 BQ226741 BI909681 BG329015 F34812 BE903025 
    AA524770 BE389646 AV735630 BG878451 BM015885 BE621021 BI761824 BF976105 
    BU933286 BG180316 AA922446 BF681353 CD389237 AA627190 BI836057 BI754807 
    BU172990 BU954493 CB984858 BG340745 N88615 BG758126 AV697308 BE296964 
    BG110660 AV707055 BI457498 CD387035 AA858143 BE736166 BG329907 BG337851 
    BE250796 BM014785 BG328210 BE257170 CD385271 AA828863 BQ678679 CD246968 
    BG498827 BQ687463 BF975610 BF686275 N64055 BE694003 BF211491 BG499466 
    BM911212 BQ056991 BG164942 BE818716 BE301323 BE905726 BF329955 BE392604 
    BE280089 BF034141 CD248091 BF238036 BF663862 BG281882 BG496920 AV751480 
    CD388941 BG684514 BQ222422 BG285654 CD390135 AV756654 BG755061 BE771954 
    AV759312 BE772932 CD175479 CD248661 BF310146 N85502 AA091203 BE900219 
    AW949699 BG421719 BE260452 AA557884 AW157323 CD247851 AI826819 BF239298 
    BU537291 AW157324 CD174561 AA595310 AW409743 BF372970 AA527955 CD048017 
    BQ065417 AA186435 F37881 BF375458 AA640276 AJ714750 BU587219 CD389519 
    CD389302 N87566 AA773652 BE268358 BG397073 BG473809 AJ712493 AA186344 
    BG751206 BF129088 AI434756 AV711300 BE258128 BE293899 BU158533 CD390150 
    BE730742 BG490185 BE902086 BE393827 BE278007 AV702378 BG331330 BU557830 
    BQ228431 BF127774 BU553221 BG028962 CD050080 BG331875 BE279967 BE737266 
    BE732576 BM006596 BG330994 CD247154 BI194969 BE732087 BG281544 BE744269 
    BG329344 BE818719 BF131674 AV738610 BE298132 BE277128 BE567392 BE281517 
    BF244466 CD386990 BI769479 BG479543 BF237841 BF127884 BE313155 CD556024 
    AV758182 BE737775 BE252660 D57108 AA736539 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    RPS17 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGCCGCGTTC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    RPS17 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    OvaryPrimary FolliclePrimary OocyteFemale Gametocytes, Germ Cells
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Endoderm-like cells (Generation of hepato...)

    See RPS17 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for RPS17
        SABiosciences Custom PCR Arrays for RPS17
    Primer
    Products:
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RPS17
    In Situ
    Assay Products:
     

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for RPS17

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RPS17 gene from 9/37 species (see all 37)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    85(a)
    1 → many
    10(707000-709787)
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    99(a)
    1 → many
    GL343479.1(636199-639072)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.83372 Xenopus laevis transcribed sequence with strong similarity more 79.49(n)    CB943667.1 
    zebrafish
    (Danio rerio)
    Actinopterygii BQ418878.12   -- 83(n)    BQ418878.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta RpS171 , 3 protein biosynthesis structural constituent
    of more3
    Ribosomal protein S171
    79(a)3
    72.95(n)1
    81.15(a)1
      3 67B43
    390881  NM_079278.21  NP_524002.11 
    worm
    (Caenorhabditis elegans)
    Secernentea rps-173 40S ribosomal protein S17 71(a)   I(6228214-6228815)   --
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RPS17B(YDR447C)4
    RPS17A1
    Ribosomal protein 51 (rp51) of the small (40s) subunit; more4
    Rps17ap1
    63.91(n)1
    69.72(a)1
      4(1355553-1354829)4
    8549841  NP_013688.11  8520584 
     NP_010735.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G052201 40S ribosomal protein S17-2 58.2(n)
    62.7(a)
      815070  NM_126548.4  NP_565320.1 
    rice
    (Oryza sativa)
    Liliopsida Os.463712 Transcribed sequence with weak similarity to protein more 71.13(n)    CB966919.1 


    ENSEMBL Gene Tree for RPS17 (if available)
    TreeFam Gene Tree for RPS17 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for RPS17 gene
    RPS17L1 2  
    2 SIMAP similar genes for RPS17 using alignment to 2 protein entries:     RS17_HUMAN (see all proteins):
    RPS17L    LOC392101

    RPS17 for paralogs           About GeneDecksing


    5/26 Pseudogenes.org Pseudogenes for RPS17 (see all 26)
    PGOHUM00000242480 PGOHUM00000247171 PGOHUM00000237351 PGOHUM00000244323 PGOHUM00000262142


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10 NCBI SNPs in RPS17 are shown     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 15 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1168408111,2
    Cpathogenic82824835(-) CAACAG/TGGTAG 2 R M mis10--------
    rs1488102471,2
    ----82822408(+) GCAGGC/GAGATT 1 -- int10--------
    rs1470557891,2
    ----82823632(+) CCCCCA/CACTCG 1 -- int10--------
    rs1412937301,2
    ----82826010(+) TTTTTG/TTTTTT 1 -- us2k10--------
    rs1512572771,2
    ----82823423(+) GAACAA/GTGAGA 1 -- int10--------
    rs1469949521,2
    ----82826601(+) CCCAGG/TCTGGC 1 -- us2k10--------
    rs1404537001,2
    ----82823466(+) ATGTGC/GATATA 1 -- int10--------
    rs1168408121,2
    --pathogenic82823348(-) AGTAA-/GAGGTAT 2 R fra10--------
    rs1476951121,2
    ----82825597(+) TCAGGC/TACCTT 1 -- us2k10--------
    rs1422623041,2
    ----82823390(+) GTGACA/GTAACT 2 Y syn10--------

    HapMap Linkage Disequilibrium report for RPS17 (82821158 - 82824972 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 8 variations for RPS17
         8 CNVs: 0190 30716 3972 72314 72323 2197 7074 0788
    Human Gene Mutation Database (HGMD): RPS17

    Locus Specific Mutation Databases (LSDB): RPS17

    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RPS17
    DNA2.0 Custom Variant and Variant Library Synthesis for RPS17

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    RPS17 for disorders           About GeneDecksing

    OMIM gene information: 180472   
    OMIM disorders: 612527  
    UniProtKB/Swiss-Prot: RS17_HUMAN, P08708
  • Defects in RPS17 are the cause of Diamond-Blackfan anemia type 4 (DBA4) [MIM:612527]. DBA4 is a form of
  • Diamond-Blackfan anemia, a congenital non-regenerative hypoplastic anemia that usually presents early in infancy.
    Diamond-Blackfan anemia is characterized by a moderate to severe macrocytic anemia, erythroblastopenia, and an
    increased risk of malignancy. 30 to 40% of Diamond-Blackfan anemia patients present with short stature and congenital
    anomalies, the most frequent being craniofacial (Pierre-Robin syndrome and cleft palate), thumb and urogenital
    anomalies

    13 diseases for RPS17:    About MalaCards
    diamond-blackfan anemia    macrocytic anemia    short stature    cleft palate
    reactive arthritis    aplastic anemia    macular degeneration    anemia
    arthritis    ataxia    malaria    leukemia
    carcinoma

    2 diseases from the University of Copenhagen DISEASES database for RPS17:
    Diamond-Blackfan anemia     Pure red-cell aplasia
    GeneTests: RPS17
    Diamond-Blackfan Anemia

    Human Genome Epidemiology (HuGE) Navigator: RPS17 (2 documents)

    Export disorders for RPS17 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for RPS17 gene, integrated from 9 sources (see all 54):
    (articles sorted by number of sources associating them with RPS17)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. [Mapping the genes for ribosomal proteins S14 and S17 on human chromosomes using cDNA from a panel of hybrid cells] (PubMed id 7661859)1, 3, 9 Filipenko M.L....Mertvetsov N.P. (1995)
    2. Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients. (PubMed id 19061985)1, 2 Gazda H.T....Beggs A.H. (2008)
    3. Ribosomal protein S17 gene (RPS17) is mutated in Diamond-Blackfan anemia. (PubMed id 17647292)1, 2 Cmejla R....Pospisilova D. (2007)
    4. Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171)1, 2 Zody M.C....Nusbaum C. (2006)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    7. Characterization of the human small-ribosomal-subunit proteins by N- terminal and internal sequencing, and mass spectrometry. (PubMed id 8706699)1, 2 Vladimirov S.N.... Otto A. (1996)
    8. The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome. (PubMed id 1577483)1, 3 Feo S....Fried M. (1992)
    9. The transcriptionally active human ribosomal protein S17 gene. (PubMed id 3240863)1, 2 Chen I.-T. and Roufa D.J. (1988)
    10. Homologous ribosomal proteins in bacteria, yeast, and humans. (PubMed id 3529092)1, 2 Chen I.-T.... Roufa D.J. (1986)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 6218 HGNC: 10397 AceView: RPS17 Ensembl:ENSG00000184779 euGenes: HUgn6218
    ECgene: RPS17 Kegg: 6218 H-InvDB: RPS17

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for RPS17 Pharmacogenomics, SNPs, Pathways
    Diamond-Blackfan Anemia mutation databasehttp://www.dbagenes.unito.it/home.php?select_db=RPS17

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for RPS17 gene:
    Search GeneIP for patents involving RPS17

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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    von Willebrand factor
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