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Aliases for RPS16P6 Gene

Subcategory (RNA class) for RPS16P6 Gene

lncRNA

Aliases for RPS16P6 Gene

  • Ribosomal Protein S16 Pseudogene 6 2 3
  • RPS16_3_1149 3
  • AP001187.11 5

External Ids for RPS16P6 Gene

ORGUL Members for RPS16P6 Gene

Previous GeneCards Identifiers for RPS16P6 Gene

  • GC11U901297
  • GC11P064650

Summaries for RPS16P6 Gene

GeneCards Summary for RPS16P6 Gene

RPS16P6 (Ribosomal Protein S16 Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P6 Gene

Genomics for RPS16P6 Gene

Regulatory Elements for RPS16P6 Gene

Enhancers for RPS16P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F065115 1.2 ENCODE 16.2 +235.8 235829 3.5 HDGF PKNOX1 ARNT MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 LOC105369342 SAC3D1 RPS16P6 ENSG00000231492 CTSW NEAT1 FAU MRPL49 SYVN1 LOC728975
GH11F065414 1.4 FANTOM5 ENCODE 16.2 +542.6 542647 18.8 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 NEAT1 ZFPL1 KAT5 EIF1AD LOC105369352 POLA2 MUS81 PCNX3 FRMD8 ENSG00000255320
GH11F064447 1 FANTOM5 ENCODE 16.2 -432.8 -432754 2.1 ATF1 CBX3 PKNOX1 ZNF48 RAD21 GLIS2 SCRT2 ZNF143 RCOR1 ETV6 LOC105369342 ENSG00000231492 RPS16P6 ENSG00000203520 SAC3D1 NRXN2 SLC22A12 FERMT3 TRMT112 EHD1
GH11F065718 0.2 ENCODE 16.2 +838.3 838291 3.2 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 MRPL11 RNASEH2C LOC105369352 LOC105369351 RPS16P6 LOC105369353 CD248 RBM4B SAC3D1 SSSCA1
GH11F064884 1.2 FANTOM5 ENCODE 0.8 +4.3 4266 1.7 HDGF ARNT MLX ARID4B DMAP1 ZNF2 ZNF143 FOS DEK ZNF263 ATG2A EHD1 SF1 CDC42BPG TIGD3 RASGRP2 MAP4K2 PYGM RPS16P6
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS16P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS16P6 Gene

Chromosome:
11
Start:
64,881,535 bp from pter
End:
64,881,945 bp from pter
Size:
411 bases
Orientation:
Plus strand

Genomic View for RPS16P6 Gene

Genes around RPS16P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P6 Gene

Proteins for RPS16P6 Gene

Post-translational modifications for RPS16P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P6 Gene

Domains & Families for RPS16P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P6 Gene

Function for RPS16P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P6 Gene

Localization for RPS16P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS16P6 Gene

Pathways & Interactions for RPS16P6 Gene

SuperPathways for RPS16P6 Gene

No Data Available

Interacting Proteins for RPS16P6 Gene

Gene Ontology (GO) - Biological Process for RPS16P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P6 Gene

Transcripts for RPS16P6 Gene

mRNA/cDNA for RPS16P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P6 Gene

No ASD Table

Relevant External Links for RPS16P6 Gene

GeneLoc Exon Structure for
RPS16P6
ECgene alternative splicing isoforms for
RPS16P6

Expression for RPS16P6 Gene

mRNA expression in normal human tissues for RPS16P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS16P6 Gene

This gene is overexpressed in Testis (x42.5), Minor Salivary Gland (x5.3), and Fallopian Tube (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of RPS16P6 Gene:

RPS16P6
genes like me logo Genes that share expression patterns with RPS16P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS16P6 Gene

Orthologs for RPS16P6 Gene

Evolution for RPS16P6 Gene

ENSEMBL:
Gene Tree for RPS16P6 (if available)
TreeFam:
Gene Tree for RPS16P6 (if available)

No data available for Orthologs for RPS16P6 Gene

Paralogs for RPS16P6 Gene

No data available for Paralogs for RPS16P6 Gene

Variants for RPS16P6 Gene

Relevant External Links for RPS16P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P6 Gene

Disorders for RPS16P6 Gene

No disorders were found for RPS16P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P6 Gene

Publications for RPS16P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS16P6 Gene

Sources for RPS16P6 Gene

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