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Aliases for RPS16P6 Gene

Subcategory (RNA class) for RPS16P6 Gene

lncRNA

Aliases for RPS16P6 Gene

  • Ribosomal Protein S16 Pseudogene 6 2 3
  • RPS16_3_1149 3
  • AP001187.1 5

External Ids for RPS16P6 Gene

ORGUL Members for RPS16P6 Gene

Previous GeneCards Identifiers for RPS16P6 Gene

  • GC11U901297
  • GC11P064650

Summaries for RPS16P6 Gene

GeneCards Summary for RPS16P6 Gene

RPS16P6 (Ribosomal Protein S16 Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS16P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P6 Gene

Genomics for RPS16P6 Gene

Regulatory Elements for RPS16P6 Gene

Enhancers for RPS16P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H065414 2.2 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +542.6 542647 18.8 MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 MEF2D SF1 LOC105369352 ZFPL1 KAT5 SART1 MUS81 EIF1AD PCNX3 POLA2 SF3B2
GH11H064447 1.5 FANTOM5 Ensembl ENCODE 14.6 -432.6 -432594 2.5 PKNOX1 ATF1 FOXA2 SIN3A GLIS2 ZNF143 KLF7 RUNX3 DEK SP3 LOC105369342 ENSG00000231492 RPS16P6 ENSG00000203520 SAC3D1 NRXN2 SLC22A12 FERMT3 TRMT112 EHD1
GH11H065115 1.4 ENCODE dbSUPER 14.6 +235.8 235829 3.5 HDGF FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 LOC105369342 ZFPL1 KAT5 SAC3D1 SF3B2 RPS16P6 ENSG00000231492 MEN1 SF1 DPF2
GH11H065718 1.1 ENCODE 14.6 +838.3 838291 3.2 HDGF MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 ZNF143 RNASEH2C BBS1 ENSG00000254461 LOC105369351 RPS16P6 RBM4B SAC3D1 MAP3K11 LOC105369352 SIPA1
GH11H064884 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.3 4266 1.7 FOXA2 ATF1 MLX ARNT ARID4B DMAP1 TCF12 ZNF766 GATA2 ELK1 ATG2A EHD1 PCNX3 SF1 CDC42BPG TIGD3 RASGRP2 MAP4K2 PYGM RPS16P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS16P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS16P6 Gene

Genomic Locations for RPS16P6 Gene
chr11:64,881,535-64,881,945
(GRCh38/hg38)
Size:
411 bases
Orientation:
Plus strand
chr11:64,649,007-64,649,417
(GRCh37/hg19)

Genomic View for RPS16P6 Gene

Genes around RPS16P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P6 Gene

Proteins for RPS16P6 Gene

Post-translational modifications for RPS16P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P6 Gene

Domains & Families for RPS16P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P6 Gene

Function for RPS16P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P6 Gene

Localization for RPS16P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P6 Gene

Pathways & Interactions for RPS16P6 Gene

SuperPathways for RPS16P6 Gene

No Data Available

Interacting Proteins for RPS16P6 Gene

Gene Ontology (GO) - Biological Process for RPS16P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P6 Gene

Drugs & Compounds for RPS16P6 Gene

No Compound Related Data Available

Transcripts for RPS16P6 Gene

mRNA/cDNA for RPS16P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P6 Gene

No ASD Table

Relevant External Links for RPS16P6 Gene

GeneLoc Exon Structure for
RPS16P6
ECgene alternative splicing isoforms for
RPS16P6

Expression for RPS16P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS16P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS16P6 Gene

This gene is overexpressed in Testis (x42.5), Minor Salivary Gland (x5.3), and Fallopian Tube (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of RPS16P6 Gene:

RPS16P6
genes like me logo Genes that share expression patterns with RPS16P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P6 Gene

Orthologs for RPS16P6 Gene

Evolution for RPS16P6 Gene

ENSEMBL:
Gene Tree for RPS16P6 (if available)
TreeFam:
Gene Tree for RPS16P6 (if available)

No data available for Orthologs for RPS16P6 Gene

Paralogs for RPS16P6 Gene

No data available for Paralogs for RPS16P6 Gene

Variants for RPS16P6 Gene

Relevant External Links for RPS16P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P6 Gene

Disorders for RPS16P6 Gene

No disorders were found for RPS16P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P6 Gene

Publications for RPS16P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPS16P6 Gene

Sources for RPS16P6 Gene

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