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Aliases for RPS16P5 Gene

Aliases for RPS16P5 Gene

  • Ribosomal Protein S16 Pseudogene 5 2 3 5
  • RPS16_3_702 3

External Ids for RPS16P5 Gene

Previous GeneCards Identifiers for RPS16P5 Gene

  • GC06M053199

Summaries for RPS16P5 Gene

GeneCards Summary for RPS16P5 Gene

RPS16P5 (Ribosomal Protein S16 Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P5 Gene

Genomics for RPS16P5 Gene

Regulatory Elements for RPS16P5 Gene

Enhancers for RPS16P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F053332 1.3 FANTOM5 ENCODE 0.8 +1.6 1607 6.4 HDGF WRNIP1 BMI1 ZBTB40 ZNF366 SCRT2 ZNF207 ETV6 CREM CBFB ELOVL5 FBXO9 RPS16P5 PIR59384
GH06F053306 1.7 FANTOM5 Ensembl ENCODE 0.3 +26.0 26017 10.4 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ELOVL5 RPL31P28 FBXO9 PIR59384 RPS16P5
GH06F053324 1.2 Ensembl ENCODE 0.4 +10.9 10889 4.8 TBP SIN3A RAD21 RFX5 GLIS2 SCRT2 RCOR1 FOS ZNF263 SMARCC1 ELOVL5 RPS16P5 PIR59384
GH06F053320 1.2 Ensembl ENCODE 0.3 +15.2 15220 3.6 PKNOX1 FEZF1 ZNF48 FOS ZNF202 ZNF263 JUNB TSHZ1 PPARG ZNF518A ELOVL5 TRAM2 RPL31P28 RN7SL244P RPS16P5 PIR59384
GH06F053296 1.2 Ensembl ENCODE 0.3 +37.1 37104 7.8 MLX ARID4B SIN3A DMAP1 THRB RAD21 RARA CREM MIXL1 ZNF362 ELOVL5 RPL31P28 PIR59384 RPS16P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS16P5 on UCSC Golden Path with GeneCards custom track

Promoters for RPS16P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001881467 1917 601 HDGF MXI1 USF1 ASH2L BMI1 EBF1 ZBTB40 SCRT2 EED ETV6

Genomic Location for RPS16P5 Gene

Chromosome:
6
Start:
53,334,460 bp from pter
End:
53,337,617 bp from pter
Size:
3,158 bases
Orientation:
Minus strand

Genomic View for RPS16P5 Gene

Genes around RPS16P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P5 Gene

Proteins for RPS16P5 Gene

Post-translational modifications for RPS16P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P5 Gene

Domains & Families for RPS16P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P5 Gene

Function for RPS16P5 Gene

Phenotypes for RPS16P5 Gene

GenomeRNAi human phenotypes for RPS16P5:
genes like me logo Genes that share phenotypes with RPS16P5: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P5 Gene

Localization for RPS16P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS16P5 Gene

Pathways & Interactions for RPS16P5 Gene

SuperPathways for RPS16P5 Gene

No Data Available

Interacting Proteins for RPS16P5 Gene

Gene Ontology (GO) - Biological Process for RPS16P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P5 Gene

Transcripts for RPS16P5 Gene

mRNA/cDNA for RPS16P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P5 Gene

No ASD Table

Relevant External Links for RPS16P5 Gene

GeneLoc Exon Structure for
RPS16P5
ECgene alternative splicing isoforms for
RPS16P5

Expression for RPS16P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS16P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPS16P5 Gene

This gene is overexpressed in Whole Blood (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of RPS16P5 Gene:

RPS16P5
genes like me logo Genes that share expression patterns with RPS16P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS16P5 Gene

Orthologs for RPS16P5 Gene

Evolution for RPS16P5 Gene

ENSEMBL:
Gene Tree for RPS16P5 (if available)
TreeFam:
Gene Tree for RPS16P5 (if available)

No data available for Orthologs for RPS16P5 Gene

Paralogs for RPS16P5 Gene

No data available for Paralogs for RPS16P5 Gene

Variants for RPS16P5 Gene

Sequence variations from dbSNP and Humsavar for RPS16P5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs112131390 -- 53,335,900(+) TGCTC(A/G)GAAGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs114179822 -- 53,338,291(+) TACTG(A/T)CACTT intron-variant, upstream-variant-2KB
rs114583763 -- 53,336,803(+) GGTAA(A/G)CAAGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115268972 -- 53,334,096(+) AAACT(C/T)CTGAA intron-variant, downstream-variant-500B
rs116024475 -- 53,337,063(+) CCTCA(C/T)CTACA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPS16P5 Gene

Variant ID Type Subtype PubMed ID
nsv1033994 CNV gain 25217958
esv2763940 CNV gain+loss 21179565

Relevant External Links for RPS16P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS16P5 Gene

Disorders for RPS16P5 Gene

Relevant External Links for RPS16P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS16P5

No disorders were found for RPS16P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS16P5 Gene

Publications for RPS16P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RPS16P5 Gene

Sources for RPS16P5 Gene

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