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Aliases for RPS16P5 Gene

Aliases for RPS16P5 Gene

  • Ribosomal Protein S16 Pseudogene 5 2 3 5
  • RPS16_3_702 3

External Ids for RPS16P5 Gene

Previous GeneCards Identifiers for RPS16P5 Gene

  • GC06M053199

Summaries for RPS16P5 Gene

GeneCards Summary for RPS16P5 Gene

RPS16P5 (Ribosomal Protein S16 Pseudogene 5) is a Pseudogene.

Additional gene information for RPS16P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P5 Gene

Genomics for RPS16P5 Gene

Regulatory Elements for RPS16P5 Gene

Enhancers for RPS16P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H053332 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +1.6 1620 6 HDGF FOXA2 SIN3A BMI1 BATF SCRT2 ATF7 ETV6 RUNX3 CREM ELOVL5 FBXO9 RPS16P5 PIR59384
GH06H053306 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +27.2 27176 8 HDGF PKNOX1 FOXA2 ATF1 FEZF1 DMAP1 YY1 TCF12 ZNF766 GATA2 EFHC1 ELOVL5 RPL31P28 FBXO9 PIR59384 RPS16P5
GH06H053321 1.4 Ensembl ENCODE dbSUPER 0.4 +14.6 14621 2 PKNOX1 FOXA2 FEZF1 ZNF48 RARA ZSCAN5C SCRT2 FOS MIXL1 ZNF202 ELOVL5 EFHC1 RPL31P28 RPS16P5 PIR59384
GH06H053324 1.4 Ensembl ENCODE dbSUPER 0.4 +10.9 10889 4 TBP SIN3A RFX5 GLIS2 SCRT2 RCOR1 FOS SMARCC1 ZNF362 USF2 EFHC1 ELOVL5 RPS16P5 PIR59384
GH06H053299 1.4 Ensembl ENCODE dbSUPER 0.3 +35.8 35752 5 FOXA2 MLX ARID4B DMAP1 THRB RAD21 RARA YY1 RUNX3 CREM ELOVL5 RPL31P28 PIR59384 RPS16P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS16P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS16P5 Gene

Chromosome:
6
Start:
53,334,460 bp from pter
End:
53,337,617 bp from pter
Size:
3,158 bases
Orientation:
Minus strand

Genomic View for RPS16P5 Gene

Genes around RPS16P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P5 Gene

Proteins for RPS16P5 Gene

Post-translational modifications for RPS16P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P5 Gene

Domains & Families for RPS16P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P5 Gene

Function for RPS16P5 Gene

Phenotypes From GWAS Catalog for RPS16P5 Gene

Phenotypes for RPS16P5 Gene

GenomeRNAi human phenotypes for RPS16P5:
genes like me logo Genes that share phenotypes with RPS16P5: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS16P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P5 Gene

Localization for RPS16P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P5 Gene

Pathways & Interactions for RPS16P5 Gene

SuperPathways for RPS16P5 Gene

No Data Available

Interacting Proteins for RPS16P5 Gene

Gene Ontology (GO) - Biological Process for RPS16P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P5 Gene

Drugs & Compounds for RPS16P5 Gene

No Compound Related Data Available

Transcripts for RPS16P5 Gene

mRNA/cDNA for RPS16P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS16P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P5 Gene

No ASD Table

Relevant External Links for RPS16P5 Gene

GeneLoc Exon Structure for
RPS16P5
ECgene alternative splicing isoforms for
RPS16P5

Expression for RPS16P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS16P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPS16P5 Gene

This gene is overexpressed in Whole Blood (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of RPS16P5 Gene:

RPS16P5
genes like me logo Genes that share expression patterns with RPS16P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P5 Gene

Orthologs for RPS16P5 Gene

Evolution for RPS16P5 Gene

ENSEMBL:
Gene Tree for RPS16P5 (if available)
TreeFam:
Gene Tree for RPS16P5 (if available)

No data available for Orthologs for RPS16P5 Gene

Paralogs for RPS16P5 Gene

No data available for Paralogs for RPS16P5 Gene

Variants for RPS16P5 Gene

Sequence variations from dbSNP and Humsavar for RPS16P5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000558467 -- 53,337,650(+) GGCAC(A/G)TAATT intron-variant, upstream-variant-2KB
rs1000631904 -- 53,337,299(+) AGCAC(C/T)ACAGC intron-variant, nc-transcript-variant
rs1001810824 -- 53,336,784(+) CCCTA(A/C)CAGGT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001966876 -- 53,338,103(+) TGGTG(C/G)GTGGG intron-variant, upstream-variant-2KB
rs1003605916 -- 53,334,915(+) TCTCC(A/C)AAATC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPS16P5 Gene

Variant ID Type Subtype PubMed ID
esv2763940 CNV gain+loss 21179565
nsv1033994 CNV gain 25217958

Relevant External Links for RPS16P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS16P5 Gene

Disorders for RPS16P5 Gene

Relevant External Links for RPS16P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS16P5

No disorders were found for RPS16P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS16P5 Gene

Publications for RPS16P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for RPS16P5 Gene

Sources for RPS16P5 Gene

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