Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS16P4 Gene

Subcategory (RNA class) for RPS16P4 Gene

lncRNA

Aliases for RPS16P4 Gene

  • Ribosomal Protein S16 Pseudogene 4 2 3
  • RPS16_2_363 3
  • AC097359.2 5

External Ids for RPS16P4 Gene

ORGUL Members for RPS16P4 Gene

Previous GeneCards Identifiers for RPS16P4 Gene

  • GC03U901229
  • GC03P037240
  • GC03P037242

Summaries for RPS16P4 Gene

GeneCards Summary for RPS16P4 Gene

RPS16P4 (Ribosomal Protein S16 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P4 Gene

Genomics for RPS16P4 Gene

Regulatory Elements for RPS16P4 Gene

Enhancers for RPS16P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G037173 1.7 FANTOM5 ENCODE dbSUPER 11.3 -20.3 -20337 4.8 HNRNPUL1 PKNOX1 FOXA2 CREB3L1 AGO1 ZFP64 SIN3A ARID4B FEZF1 DMAP1 LRRFIP2 UBE2FP1 RNU6-1301P RPS16P4 MLH1 C3orf35 DCLK3 TRANK1 GC03P037179
GH03G037216 1.4 FANTOM5 ENCODE dbSUPER 12.8 +21.6 21635 3.3 ELF3 TBP CBX3 ARID4B DMAP1 RAD21 ZNF48 RARA MIXL1 THAP11 LRRFIP2 RPS16P4 GOLGA4 ENSG00000271653
GH03G037129 1.4 Ensembl ENCODE dbSUPER 11.7 -65.0 -65002 4.3 HDAC1 ATF1 PKNOX1 BMI1 RAD21 ZBTB40 CBX5 GATA2 RELB FOS LRRFIP2 RPS16P4 UBE2D3P2 GC03M037093 ENSG00000206645
GH03G037227 1.3 ENCODE dbSUPER 12.4 +33.2 33173 2.8 HDGF FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 ZNF766 SP5 LRRFIP2 GOLGA4 RPS16P4 RPL29P11 MLH1 ENSG00000271653
GH03G037242 1.4 ENCODE dbSUPER 10.6 +47.5 47514 3.3 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 LRRFIP2 GOLGA4 RPS16P4 ENSG00000272334 ENSG00000270194
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS16P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS16P4 Gene

Chromosome:
3
Start:
37,196,204 bp from pter
End:
37,196,669 bp from pter
Size:
466 bases
Orientation:
Plus strand

Genomic View for RPS16P4 Gene

Genes around RPS16P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P4 Gene

Proteins for RPS16P4 Gene

Post-translational modifications for RPS16P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P4 Gene

Domains & Families for RPS16P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P4 Gene

Function for RPS16P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P4 Gene

Localization for RPS16P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS16P4 Gene

Pathways & Interactions for RPS16P4 Gene

SuperPathways for RPS16P4 Gene

No Data Available

Interacting Proteins for RPS16P4 Gene

Gene Ontology (GO) - Biological Process for RPS16P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P4 Gene

Drugs & Compounds for RPS16P4 Gene

No Compound Related Data Available

Transcripts for RPS16P4 Gene

mRNA/cDNA for RPS16P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P4 Gene

No ASD Table

Relevant External Links for RPS16P4 Gene

GeneLoc Exon Structure for
RPS16P4
ECgene alternative splicing isoforms for
RPS16P4

Expression for RPS16P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS16P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS16P4 Gene:

RPS16P4
genes like me logo Genes that share expression patterns with RPS16P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P4 Gene

Orthologs for RPS16P4 Gene

Evolution for RPS16P4 Gene

ENSEMBL:
Gene Tree for RPS16P4 (if available)
TreeFam:
Gene Tree for RPS16P4 (if available)

No data available for Orthologs for RPS16P4 Gene

Paralogs for RPS16P4 Gene

No data available for Paralogs for RPS16P4 Gene

Variants for RPS16P4 Gene

Relevant External Links for RPS16P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P4 Gene

Disorders for RPS16P4 Gene

No disorders were found for RPS16P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P4 Gene

Publications for RPS16P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS16P4 Gene

Sources for RPS16P4 Gene

Content
Loading form....