Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS16P4 Gene

Subcategory (RNA class) for RPS16P4 Gene

lncRNA

Aliases for RPS16P4 Gene

  • Ribosomal Protein S16 Pseudogene 4 2 3
  • RPS16_2_363 3
  • AC097359.1 5

External Ids for RPS16P4 Gene

ORGUL Members for RPS16P4 Gene

Previous GeneCards Identifiers for RPS16P4 Gene

  • GC03U901229
  • GC03P037240
  • GC03P037242

Summaries for RPS16P4 Gene

GeneCards Summary for RPS16P4 Gene

RPS16P4 (Ribosomal Protein S16 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS16P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P4 Gene

Genomics for RPS16P4 Gene

GeneHancer (GH) Regulatory Elements for RPS16P4 Gene

Promoters and enhancers for RPS16P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I037196 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 +1.8 1810 3.3 STAT1 HLF KLF17 ZKSCAN1 PRDM6 GLIS1 TCF7L2 SETDB1 RPS16P4 LRRFIP2 MLH1 LOC105377642 GC03P036930
GH03I037173 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 -20.3 -20336 4.8 PKNOX1 SMAD1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 LRRFIP2 GC03P037179 UBE2FP1 RNU6-1301P RPS16P4 MLH1 C3orf35 DCLK3 TRANK1 GC03P036930
GH03I037242 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.6 +47.5 47513 3.3 HDGF PKNOX1 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 GOLGA4 LOC152048 LRRFIP2 RPS16P4 ENSG00000272334 GC03P036930
GH03I036988 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.5 -204.7 -204672 7.1 CLOCK ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 SP3 NFYC SSRP1 MLH1 EPM2AIP1 TRANK1 LRRFIP2 ENSG00000272334 RPS16P4 GC03P036930
GH03I037216 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 12.9 +21.6 21635 3.3 ELF3 ARID4B DMAP1 RAD21 ZNF48 RARA ZNF280A THAP11 MIXL1 KLF11 ENSG00000271653 LRRFIP2 RPS16P4 GOLGA4 GC03P036930
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS16P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS16P4 Gene

Genomic Locations for RPS16P4 Gene
chr3:37,196,204-37,196,669
(GRCh38/hg38)
Size:
466 bases
Orientation:
Plus strand
chr3:37,237,695-37,238,160
(GRCh37/hg19)

Genomic View for RPS16P4 Gene

Genes around RPS16P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P4 Gene

Proteins for RPS16P4 Gene

Post-translational modifications for RPS16P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P4 Gene

Domains & Families for RPS16P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P4 Gene

Function for RPS16P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P4 Gene

Localization for RPS16P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P4 Gene

Pathways & Interactions for RPS16P4 Gene

SuperPathways for RPS16P4 Gene

No Data Available

Interacting Proteins for RPS16P4 Gene

Gene Ontology (GO) - Biological Process for RPS16P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P4 Gene

Drugs & Compounds for RPS16P4 Gene

No Compound Related Data Available

Transcripts for RPS16P4 Gene

mRNA/cDNA for RPS16P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P4 Gene

No ASD Table

Relevant External Links for RPS16P4 Gene

GeneLoc Exon Structure for
RPS16P4
ECgene alternative splicing isoforms for
RPS16P4

Expression for RPS16P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS16P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS16P4 Gene:

RPS16P4
genes like me logo Genes that share expression patterns with RPS16P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P4 Gene

Orthologs for RPS16P4 Gene

Evolution for RPS16P4 Gene

ENSEMBL:
Gene Tree for RPS16P4 (if available)
TreeFam:
Gene Tree for RPS16P4 (if available)

No data available for Orthologs for RPS16P4 Gene

Paralogs for RPS16P4 Gene

No data available for Paralogs for RPS16P4 Gene

Variants for RPS16P4 Gene

Additional Variant Information for RPS16P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P4 Gene

Disorders for RPS16P4 Gene

No disorders were found for RPS16P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P4 Gene

Publications for RPS16P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS16P4 Gene

Sources for RPS16P4 Gene

Content
Loading form....