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Aliases for RPS16P1 Gene

Aliases for RPS16P1 Gene

  • Ribosomal Protein S16 Pseudogene 1 2 3
  • RPS16_1_14 3
  • AL450998.1 5

External Ids for RPS16P1 Gene

Previous GeneCards Identifiers for RPS16P1 Gene

  • GC01P016029
  • GC01P016155

Summaries for RPS16P1 Gene

GeneCards Summary for RPS16P1 Gene

RPS16P1 (Ribosomal Protein S16 Pseudogene 1) is a Pseudogene.

Additional gene information for RPS16P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P1 Gene

Genomics for RPS16P1 Gene

Regulatory Elements for RPS16P1 Gene

Enhancers for RPS16P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H016729 1.3 ENCODE dbSUPER 49.8 +899.3 899329 0.2 HNRNPUL1 ARNT FEZF1 GLI4 ZNF2 ETS1 ZNF121 GTF3C2 FOS ZNF548 ENSG00000237938 SPEN RPS16P1 ARHGEF19 MFAP2 RPL22P3 CROCC CROCCP3 ZBTB17 ENSG00000224621
GH01H016703 1.3 ENCODE dbSUPER 30.1 +875.1 875119 0.2 HDGF FOXA2 MLX ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF416 ZNF143 ENSG00000237938 ARHGEF19 MFAP2 RPL22P3 RPS16P1 ENSG00000224621 SPEN ZBTB17 EIF1AXP1 EPHA2
GH01H015791 2 FANTOM5 Ensembl ENCODE dbSUPER 18.1 -30.7 -30710 11.3 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 MEF2D GLIS1 RCOR2 CLCNKA FAM231A HSPB7 FBLIM1 ENSG00000237938 RPS16P1 CD24P1 RNU1-1 SPEN ZBTB17
GH01H016727 1.2 ENCODE dbSUPER 29.6 +899.6 899589 0.2 GLI4 ZNF548 SP3 MCM3 ZC3H11A JUNB REST ZNF518A SMARCA4 ZNF585B ENSG00000237938 CROCCP3 CROCC LINC01772 MFAP2 SPEN RPS16P1 RPL22P3 FAM231A ZBTB17
GH01H014994 1.5 Ensembl ENCODE dbSUPER 20.8 -831.8 -831798 3.1 HDGF ATF1 ZNF493 ZFP64 ZNF121 ZNF766 ZNF302 GATA2 FOS KLF7 SPEN ENSG00000237938 ZBTB17 RPS16P1 ENSG00000237301 TMEM51-AS1 DNAJC16 PIR50978 LOC105376758
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS16P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS16P1 Gene

Genomic Locations for RPS16P1 Gene
chr1:15,828,212-15,828,733
(GRCh38/hg38)
Size:
522 bases
Orientation:
Plus strand
chr1:16,154,707-16,155,228
(GRCh37/hg19)

Genomic View for RPS16P1 Gene

Genes around RPS16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P1 Gene

Proteins for RPS16P1 Gene

Post-translational modifications for RPS16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P1 Gene

Domains & Families for RPS16P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P1 Gene

Function for RPS16P1 Gene

Phenotypes From GWAS Catalog for RPS16P1 Gene

Phenotypes for RPS16P1 Gene

GenomeRNAi human phenotypes for RPS16P1:
genes like me logo Genes that share phenotypes with RPS16P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P1 Gene

Localization for RPS16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P1 Gene

Pathways & Interactions for RPS16P1 Gene

SuperPathways for RPS16P1 Gene

No Data Available

Interacting Proteins for RPS16P1 Gene

Gene Ontology (GO) - Biological Process for RPS16P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P1 Gene

Drugs & Compounds for RPS16P1 Gene

No Compound Related Data Available

Transcripts for RPS16P1 Gene

mRNA/cDNA for RPS16P1 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P1 Gene

No ASD Table

Relevant External Links for RPS16P1 Gene

GeneLoc Exon Structure for
RPS16P1
ECgene alternative splicing isoforms for
RPS16P1

Expression for RPS16P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS16P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS16P1 Gene:

RPS16P1
genes like me logo Genes that share expression patterns with RPS16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P1 Gene

Orthologs for RPS16P1 Gene

Evolution for RPS16P1 Gene

ENSEMBL:
Gene Tree for RPS16P1 (if available)
TreeFam:
Gene Tree for RPS16P1 (if available)

No data available for Orthologs for RPS16P1 Gene

Paralogs for RPS16P1 Gene

No data available for Paralogs for RPS16P1 Gene

Variants for RPS16P1 Gene

Relevant External Links for RPS16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P1 Gene

Disorders for RPS16P1 Gene

No disorders were found for RPS16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P1 Gene

Publications for RPS16P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPS16P1 Gene

Sources for RPS16P1 Gene

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