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Aliases for RPS16P1 Gene

Aliases for RPS16P1 Gene

  • Ribosomal Protein S16 Pseudogene 1 2 3
  • RP11-169K16.8 5
  • RPS16_1_14 3

External Ids for RPS16P1 Gene

Previous GeneCards Identifiers for RPS16P1 Gene

  • GC01P016029
  • GC01P016155

Summaries for RPS16P1 Gene

GeneCards Summary for RPS16P1 Gene

RPS16P1 (Ribosomal Protein S16 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P1 Gene

Genomics for RPS16P1 Gene

Regulatory Elements for RPS16P1 Gene

Enhancers for RPS16P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F015846 0.8 FANTOM5 ENCODE 27.5 +21.5 21488 6.4 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 MEF2D SSRP1 ENSG00000237938 SPEN RPS16P1 EIF1AXP1 ENSG00000224621 HSPB7 CLCNKA RPL22P3 FBXO42 ZBTB17
GH01F016730 1 ENCODE 27.4 +899.3 899329 0.2 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 ZNF548 ENSG00000237938 RPS16P1 SPEN MFAP2 RPL22P3 ENSG00000224621 ZBTB17 NBPF1 LINC01772 RCC2
GH01F015248 1.4 FANTOM5 Ensembl ENCODE 20.3 -579.1 -579126 1.0 PKNOX1 ZFP64 RAD21 YY1 ZNF121 ZNF354C KLF7 CREM ZNF680 ZNF654 SPEN ENSG00000237938 RPS16P1 FHAD1 LOC101927417 ENSG00000224621 DNAJC16 TMEM51 PLEKHM2 EFHD2
GH01F014994 0.8 Ensembl ENCODE 20.3 -831.7 -831712 3.4 HDGF ATF1 PKNOX1 ZFP64 ZNF493 ZNF121 ZNF766 ZNF302 GATA2 ZNF143 SPEN ENSG00000237938 RPS16P1 ZBTB17 DNAJC16 PIR50978 LOC105376758
GH01F015882 1.1 FANTOM5 Ensembl ENCODE 19.2 +57.1 57101 5.4 PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 DEK SP3 SPEN ENSG00000237938 EIF1AXP1 FBXO42 RPL22P3 RPS16P1 HSPB7 FLJ37453 ENSG00000224621 LINC01772
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS16P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS16P1 Gene

Chromosome:
1
Start:
15,828,212 bp from pter
End:
15,828,733 bp from pter
Size:
522 bases
Orientation:
Plus strand

Genomic View for RPS16P1 Gene

Genes around RPS16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P1 Gene

Proteins for RPS16P1 Gene

Post-translational modifications for RPS16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P1 Gene

Domains & Families for RPS16P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P1 Gene

Function for RPS16P1 Gene

Phenotypes for RPS16P1 Gene

GenomeRNAi human phenotypes for RPS16P1:
genes like me logo Genes that share phenotypes with RPS16P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P1 Gene

Localization for RPS16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS16P1 Gene

Pathways & Interactions for RPS16P1 Gene

SuperPathways for RPS16P1 Gene

No Data Available

Interacting Proteins for RPS16P1 Gene

Gene Ontology (GO) - Biological Process for RPS16P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P1 Gene

Transcripts for RPS16P1 Gene

mRNA/cDNA for RPS16P1 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P1 Gene

No ASD Table

Relevant External Links for RPS16P1 Gene

GeneLoc Exon Structure for
RPS16P1
ECgene alternative splicing isoforms for
RPS16P1

Expression for RPS16P1 Gene

mRNA expression in normal human tissues for RPS16P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS16P1 Gene:

RPS16P1
genes like me logo Genes that share expression patterns with RPS16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS16P1 Gene

Orthologs for RPS16P1 Gene

Evolution for RPS16P1 Gene

ENSEMBL:
Gene Tree for RPS16P1 (if available)
TreeFam:
Gene Tree for RPS16P1 (if available)

No data available for Orthologs for RPS16P1 Gene

Paralogs for RPS16P1 Gene

No data available for Paralogs for RPS16P1 Gene

Variants for RPS16P1 Gene

Relevant External Links for RPS16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P1 Gene

Disorders for RPS16P1 Gene

No disorders were found for RPS16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P1 Gene

Publications for RPS16P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS16P1 Gene

Sources for RPS16P1 Gene

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