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Aliases for RPS16P1 Gene

Aliases for RPS16P1 Gene

  • Ribosomal Protein S16 Pseudogene 1 2 3
  • RPS16_1_14 3
  • AL450998.1 5

External Ids for RPS16P1 Gene

Previous GeneCards Identifiers for RPS16P1 Gene

  • GC01P016029
  • GC01P016155

Summaries for RPS16P1 Gene

GeneCards Summary for RPS16P1 Gene

RPS16P1 (Ribosomal Protein S16 Pseudogene 1) is a Pseudogene.

Additional gene information for RPS16P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS16P1 Gene

Genomics for RPS16P1 Gene

GeneHancer (GH) Regulatory Elements for RPS16P1 Gene

Promoters and enhancers for RPS16P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I015828 Enhancer 0.6 Ensembl dbSUPER 550.8 +0.1 89 0.2 ZBTB6 MLLT1 RPS16P1 FLJ37453 GC01P015847
GH01I015826 Enhancer 0.3 dbSUPER 550.8 -1.4 -1366 0.4 GATA3 RPS16P1 SZRD1 UQCRHL
GH01I016348 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE 20 +522.8 522759 5.5 SMAD1 ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B ZNF766 CBX5 ZNF213 FBXO42 SZRD1 ENSG00000237938 RPL22P3 SPEN ARHGEF19 CROCC RPS16P1 MFAP2 ZBTB17
GH01I016729 Enhancer 1.2 ENCODE dbSUPER 41.6 +899.3 899329 0.2 HNRNPUL1 ARNT FEZF1 GLI4 ZNF2 ETS1 GTF3C2 ZNF121 ZNF213 ZNF548 GC01P016729 TRG-CCC5-1 TRV-CAC13-1 SPEN ENSG00000237938 CROCC CROCCP3 RPS16P1 ZBTB17 RPL22P3
GH01I016703 Enhancer 1.2 ENCODE dbSUPER 30.1 +875.1 875119 0.2 HDGF FOXA2 MLX ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF416 ZNF207 ENSG00000279151 ENSG00000237938 ARHGEF19 RPL22P3 MFAP2 RPS16P1 ENSG00000224621 SPEN ZBTB17 EIF1AXP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS16P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS16P1 Gene

Genomic Locations for RPS16P1 Gene
chr1:15,828,212-15,828,733
(GRCh38/hg38)
Size:
522 bases
Orientation:
Plus strand
chr1:16,154,707-16,155,228
(GRCh37/hg19)

Genomic View for RPS16P1 Gene

Genes around RPS16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P1 Gene

Proteins for RPS16P1 Gene

Post-translational modifications for RPS16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P1 Gene

Domains & Families for RPS16P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS16P1 Gene

Function for RPS16P1 Gene

Phenotypes From GWAS Catalog for RPS16P1 Gene

Phenotypes for RPS16P1 Gene

GenomeRNAi human phenotypes for RPS16P1:
genes like me logo Genes that share phenotypes with RPS16P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P1 Gene

Localization for RPS16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P1 Gene

Pathways & Interactions for RPS16P1 Gene

SuperPathways for RPS16P1 Gene

No Data Available

Interacting Proteins for RPS16P1 Gene

Gene Ontology (GO) - Biological Process for RPS16P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS16P1 Gene

Drugs & Compounds for RPS16P1 Gene

No Compound Related Data Available

Transcripts for RPS16P1 Gene

mRNA/cDNA for RPS16P1 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P1 Gene

No ASD Table

Relevant External Links for RPS16P1 Gene

GeneLoc Exon Structure for
RPS16P1
ECgene alternative splicing isoforms for
RPS16P1

Expression for RPS16P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS16P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS16P1 Gene:

RPS16P1
genes like me logo Genes that share expression patterns with RPS16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P1 Gene

Orthologs for RPS16P1 Gene

Evolution for RPS16P1 Gene

ENSEMBL:
Gene Tree for RPS16P1 (if available)
TreeFam:
Gene Tree for RPS16P1 (if available)

No data available for Orthologs for RPS16P1 Gene

Paralogs for RPS16P1 Gene

No data available for Paralogs for RPS16P1 Gene

Variants for RPS16P1 Gene

Additional Variant Information for RPS16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P1 Gene

Disorders for RPS16P1 Gene

No disorders were found for RPS16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P1 Gene

Publications for RPS16P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS16P1 Gene

Sources for RPS16P1 Gene

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