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Aliases for RPS15P4 Gene

Subcategory (RNA class) for RPS15P4 Gene

lncRNA

Aliases for RPS15P4 Gene

  • Ribosomal Protein S15 Pseudogene 4 2 3
  • RPS15_2_291 3
  • HCG1783417 3
  • AC007969.5 5

External Ids for RPS15P4 Gene

ORGUL Members for RPS15P4 Gene

Previous GeneCards Identifiers for RPS15P4 Gene

  • GC00U990335
  • GC02M172081
  • GC02M172374

Summaries for RPS15P4 Gene

GeneCards Summary for RPS15P4 Gene

RPS15P4 (Ribosomal Protein S15 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for RPS15P4 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPS15P4

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS15P4 Gene

Genomics for RPS15P4 Gene

Regulatory Elements for RPS15P4 Gene

Enhancers for RPS15P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F171521 0.7 ENCODE 10.6 -5.3 -5294 3.7 HDGF CREB3L1 SIN3A ZNF2 YY1 KLF13 SP3 REST KAT8 ZNF610 CYBRD1 DAP3P2 DCAF17 RPS15P4 TLK1 GC02P171545
GH02F171430 1.1 FANTOM5 ENCODE 10.4 +84.6 84581 5.2 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 DAP3P2 HAT1 METTL8 DCAF17 GORASP2 METAP1D RPS15P4 CYBRD1 TLK1 GC02M171404
GH02F171686 1.1 ENCODE 10.3 -170.4 -170370 2.5 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS HAT1 DAP3P2 DCAF17 GORASP2 METAP1D LOC100130256 RPS15P4 TLK1 DYNC1I2 LOC105373738
GH02F170927 1.2 FANTOM5 ENCODE 10.3 +588.2 588223 3.8 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 GORASP2 DCAF17 DAP3P2 LOC100130256 RPS15P4 TLK1 GC02M170927 GC02P170969
GH02F170820 0.6 ENCODE 9.7 +697.4 697412 0.2 RING1 ZFP64 MAX ZNF140 ZNF101 EZH2 ZNF680 RNF2 ZBTB11 CBX2 DCAF17 GORASP2 GAD1 DAP3P2 RPS15P4 ENSG00000235934 GC02M170820
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS15P4 on UCSC Golden Path with GeneCards custom track

Promoters for RPS15P4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001829493 137 400 ATF3 ZBTB33 RAD21

Genomic Location for RPS15P4 Gene

Chromosome:
2
Start:
171,517,239 bp from pter
End:
171,517,737 bp from pter
Size:
499 bases
Orientation:
Minus strand

Genomic View for RPS15P4 Gene

Genes around RPS15P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15P4 Gene

ORGUL Member Location for RPS15P4 Gene

ORGUL Member Location for RPS15P4 gene

Proteins for RPS15P4 Gene

Post-translational modifications for RPS15P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15P4 Gene

Domains & Families for RPS15P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15P4 Gene

Function for RPS15P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15P4 Gene

Localization for RPS15P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS15P4 Gene

Pathways & Interactions for RPS15P4 Gene

SuperPathways for RPS15P4 Gene

No Data Available

Interacting Proteins for RPS15P4 Gene

Gene Ontology (GO) - Biological Process for RPS15P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15P4 Gene

Transcripts for RPS15P4 Gene

fRNAdb Secondary structures for RPS15P4 Gene

  • FR045668

mRNA/cDNA for RPS15P4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15P4 Gene

No ASD Table

Relevant External Links for RPS15P4 Gene

GeneLoc Exon Structure for
RPS15P4
ECgene alternative splicing isoforms for
RPS15P4

Expression for RPS15P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS15P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS15P4 Gene:

RPS15P4
genes like me logo Genes that share expression patterns with RPS15P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS15P4 Gene

Orthologs for RPS15P4 Gene

Evolution for RPS15P4 Gene

ENSEMBL:
Gene Tree for RPS15P4 (if available)
TreeFam:
Gene Tree for RPS15P4 (if available)

No data available for Orthologs for RPS15P4 Gene

Paralogs for RPS15P4 Gene

No data available for Paralogs for RPS15P4 Gene

Variants for RPS15P4 Gene

Relevant External Links for RPS15P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15P4 Gene

Disorders for RPS15P4 Gene

No disorders were found for RPS15P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15P4 Gene

Publications for RPS15P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for RPS15P4 Gene

Sources for RPS15P4 Gene

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