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Aliases for RPS15AP30 Gene

Subcategory (RNA class) for RPS15AP30 Gene

lncRNA

Aliases for RPS15AP30 Gene

  • Ribosomal Protein S15a Pseudogene 30 2 3 5
  • RPS15A_8_1098 3

External Ids for RPS15AP30 Gene

ORGUL Members for RPS15AP30 Gene

Previous GeneCards Identifiers for RPS15AP30 Gene

  • GC10U901109
  • GC10P114748

Summaries for RPS15AP30 Gene

GeneCards Summary for RPS15AP30 Gene

RPS15AP30 (Ribosomal Protein S15a Pseudogene 30) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS15AP30 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS15AP30 Gene

Genomics for RPS15AP30 Gene

GeneHancer (GH) Regulatory Elements for RPS15AP30 Gene

Promoters and enhancers for RPS15AP30 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I112985 Enhancer 1.6 UCNEbase FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.0 -976 1.8 ZSCAN4 ZSCAN5C IKZF1 HMBOX1 ZNF24 KLF7 RUNX3 ZBTB17 SPI1 RPS15AP30 TCF7L2 LOC105378488
GH10I112987 Enhancer 0.4 ENCODE 550.8 +1.9 1933 3 USF1 ZNF189 POLR2A RPS15AP30 TCF7L2 LOC105378488 LOC105378489
GH10I112981 Enhancer 1 Ensembl ENCODE 0.4 -5.7 -5729 0.5 HDAC1 PKNOX1 BMI1 BATF IRF4 ATF7 BCLAF1 IKZF2 RUNX3 CBFB LOC105378488 TCF7L2 RPS15AP30
GH10I113007 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +20.3 20305 1.2 ELF3 FOXA2 MLX ARID4B RAD21 ZSCAN9 RARA TCF12 CREM THAP11 RPS15AP30 TCF7L2 LOC105378489
GH10I113018 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +32.9 32850 3.3 ELF3 FOXA2 MLX ARID4B FEZF1 RAD21 RARA ETS1 YY1 CREM TCF7L2 RPS15AP30 LOC105378489
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS15AP30 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS15AP30 Gene

Genomic Locations for RPS15AP30 Gene
chr10:112,987,476-112,987,865
(GRCh38/hg38)
Size:
390 bases
Orientation:
Plus strand
chr10:114,747,235-114,747,624
(GRCh37/hg19)

Genomic View for RPS15AP30 Gene

Genes around RPS15AP30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP30 Gene

Proteins for RPS15AP30 Gene

Post-translational modifications for RPS15AP30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP30 Gene

Domains & Families for RPS15AP30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15AP30 Gene

Function for RPS15AP30 Gene

Phenotypes From GWAS Catalog for RPS15AP30 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP30 Gene

Localization for RPS15AP30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP30 Gene

Pathways & Interactions for RPS15AP30 Gene

SuperPathways for RPS15AP30 Gene

No Data Available

Interacting Proteins for RPS15AP30 Gene

Gene Ontology (GO) - Biological Process for RPS15AP30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15AP30 Gene

Drugs & Compounds for RPS15AP30 Gene

No Compound Related Data Available

Transcripts for RPS15AP30 Gene

mRNA/cDNA for RPS15AP30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP30 Gene

No ASD Table

Relevant External Links for RPS15AP30 Gene

GeneLoc Exon Structure for
RPS15AP30
ECgene alternative splicing isoforms for
RPS15AP30

Expression for RPS15AP30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15AP30 Gene

mRNA differential expression in normal tissues according to GTEx for RPS15AP30 Gene

This gene is overexpressed in Liver (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RPS15AP30 Gene:

RPS15AP30
genes like me logo Genes that share expression patterns with RPS15AP30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP30 Gene

Orthologs for RPS15AP30 Gene

Evolution for RPS15AP30 Gene

ENSEMBL:
Gene Tree for RPS15AP30 (if available)
TreeFam:
Gene Tree for RPS15AP30 (if available)

No data available for Orthologs for RPS15AP30 Gene

Paralogs for RPS15AP30 Gene

No data available for Paralogs for RPS15AP30 Gene

Variants for RPS15AP30 Gene

Additional Variant Information for RPS15AP30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP30 Gene

Disorders for RPS15AP30 Gene

Additional Disease Information for RPS15AP30

Genetic Association Database
(GAD)

No disorders were found for RPS15AP30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS15AP30 Gene

Publications for RPS15AP30 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  3. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 44 58

Products for RPS15AP30 Gene

Sources for RPS15AP30 Gene

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