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Aliases for RPS15AP30 Gene

Subcategory (RNA class) for RPS15AP30 Gene

lncRNA

Aliases for RPS15AP30 Gene

  • Ribosomal Protein S15a Pseudogene 30 2 3 5
  • RPS15A_8_1098 3

External Ids for RPS15AP30 Gene

ORGUL Members for RPS15AP30 Gene

Previous GeneCards Identifiers for RPS15AP30 Gene

  • GC10U901109
  • GC10P114748

Summaries for RPS15AP30 Gene

GeneCards Summary for RPS15AP30 Gene

RPS15AP30 (Ribosomal Protein S15a Pseudogene 30) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS15AP30 Gene

Genomics for RPS15AP30 Gene

Regulatory Elements for RPS15AP30 Gene

Enhancers for RPS15AP30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G112985 2.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -1.0 -976 1.8 ZSCAN4 ZNF398 IKZF1 ZSCAN5C HMBOX1 ZNF24 KLF7 SPI1 TCF7L2 LOC105378488 RPS15AP30
GH10G113007 1.5 Ensembl ENCODE dbSUPER 0.3 +20.3 20306 1.2 FOXA2 ATF1 MLX ARID4B YY1 TCF12 GLIS2 SP5 MXD4 PPARG RPS15AP30 LOC105378489
GH10G113018 1.5 Ensembl ENCODE dbSUPER 0.3 +32.9 32850 3.3 FOXA2 ATF1 MLX ZNF133 ARID4B FEZF1 ZNF2 YY1 FOS TSHZ1 TCF7L2 RPS15AP30 LOC105378489
GH10G112981 1.1 Ensembl ENCODE 0.4 -5.7 -5729 0.5 HDAC1 PKNOX1 TBL1XR1 WRNIP1 BMI1 ZBTB40 RELB IKZF2 CREM CBFB LOC105378488 TCF7L2 RPS15AP30
GH10G112987 0.6 ENCODE 0.7 +1.9 1933 3.0 PKNOX1 ZSCAN4 TAL1 CEBPB POLR2A GATA2 PBX2 HNF4A PRDM1 TCF7L2 LOC105378488 RPS15AP30 LOC105378489
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS15AP30 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS15AP30 Gene

Chromosome:
10
Start:
112,987,476 bp from pter
End:
112,987,865 bp from pter
Size:
390 bases
Orientation:
Plus strand

Genomic View for RPS15AP30 Gene

Genes around RPS15AP30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP30 Gene

Proteins for RPS15AP30 Gene

Post-translational modifications for RPS15AP30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP30 Gene

Domains & Families for RPS15AP30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15AP30 Gene

Function for RPS15AP30 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP30 Gene

Localization for RPS15AP30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS15AP30 Gene

Pathways & Interactions for RPS15AP30 Gene

SuperPathways for RPS15AP30 Gene

No Data Available

Interacting Proteins for RPS15AP30 Gene

Gene Ontology (GO) - Biological Process for RPS15AP30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15AP30 Gene

Drugs & Compounds for RPS15AP30 Gene

No Compound Related Data Available

Transcripts for RPS15AP30 Gene

mRNA/cDNA for RPS15AP30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP30 Gene

No ASD Table

Relevant External Links for RPS15AP30 Gene

GeneLoc Exon Structure for
RPS15AP30
ECgene alternative splicing isoforms for
RPS15AP30

Expression for RPS15AP30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15AP30 Gene

mRNA differential expression in normal tissues according to GTEx for RPS15AP30 Gene

This gene is overexpressed in Liver (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RPS15AP30 Gene:

RPS15AP30
genes like me logo Genes that share expression patterns with RPS15AP30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP30 Gene

Orthologs for RPS15AP30 Gene

Evolution for RPS15AP30 Gene

ENSEMBL:
Gene Tree for RPS15AP30 (if available)
TreeFam:
Gene Tree for RPS15AP30 (if available)

No data available for Orthologs for RPS15AP30 Gene

Paralogs for RPS15AP30 Gene

No data available for Paralogs for RPS15AP30 Gene

Variants for RPS15AP30 Gene

Relevant External Links for RPS15AP30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP30 Gene

Disorders for RPS15AP30 Gene

Relevant External Links for RPS15AP30

Genetic Association Database (GAD)
RPS15AP30

No disorders were found for RPS15AP30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS15AP30 Gene

Publications for RPS15AP30 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64
  3. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C. … Cox N.J. (Am. J. Hum. Genet. 2000) 46 64

Products for RPS15AP30 Gene

Sources for RPS15AP30 Gene

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