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Aliases for RPS15AP10 Gene

Subcategory (RNA class) for RPS15AP10 Gene

lncRNA

Aliases for RPS15AP10 Gene

  • Ribosomal Protein S15a Pseudogene 10 2 3 5
  • RPS15A_4_42 3

External Ids for RPS15AP10 Gene

ORGUL Members for RPS15AP10 Gene

Previous GeneCards Identifiers for RPS15AP10 Gene

  • GC01U902301
  • GC01M046111
  • GC01M044222

Summaries for RPS15AP10 Gene

GeneCards Summary for RPS15AP10 Gene

RPS15AP10 (Ribosomal Protein S15a Pseudogene 10) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS15AP10 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS15AP10 Gene

Genomics for RPS15AP10 Gene

Regulatory Elements for RPS15AP10 Gene

Enhancers for RPS15AP10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H044720 1.7 Ensembl ENCODE dbSUPER 23.3 +923.9 923882 4 MLX ZFP64 FEZF1 YBX1 YY1 ZNF143 SP3 NFYC ZC3H11A MEF2D TOE1 GPBP1L1 RPL7AP16 MUTYH HECTD3 RPS8 DMAP1 RPS15AP10 TMEM69 NASP
GH01H046130 1.2 ENCODE 32.8 -486.6 -486617 5 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A LRRC41 TOE1 GPBP1L1 RPL7AP16 EFCAB14-AS1 RPS15AP10 TMEM69 CCDC163 MAST2 MOB3C
GH01H046178 1.6 Ensembl ENCODE dbSUPER 19.5 -535.8 -535800 6 HDGF PKNOX1 FOXA2 ARNT SIN3A ARID4B FEZF1 DMAP1 YBX1 ZNF2 GPBP1L1 TOE1 RPL7AP16 LRRC41 EFCAB14-AS1 LURAP1 RPS15AP10 CCDC163 CCDC17 NSUN4
GH01H044729 1.4 ENCODE dbSUPER 21.5 +915.3 915312 2 FEZF1 YBX1 YY1 ZNF143 SP3 NFYC ZC3H11A MEF2D ZNF610 GLIS1 TOE1 GPBP1L1 RPS8 RPL7AP16 HECTD3 NASP RPS15AP10 TMEM69 MUTYH DMAP1
GH01H045009 1.7 Ensembl ENCODE dbSUPER 11.2 +634.3 634298 5 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 UROD TOE1 HECTD3 MUTYH RPS15AP10 NASP GPBP1L1 BEST4 BTBD19 TMEM69
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS15AP10 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS15AP10 Gene

Chromosome:
1
Start:
45,645,772 bp from pter
End:
45,646,685 bp from pter
Size:
914 bases
Orientation:
Minus strand

Genomic View for RPS15AP10 Gene

Genes around RPS15AP10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP10 Gene

Proteins for RPS15AP10 Gene

Post-translational modifications for RPS15AP10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP10 Gene

Domains & Families for RPS15AP10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15AP10 Gene

Function for RPS15AP10 Gene

Phenotypes From GWAS Catalog for RPS15AP10 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS15AP10
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP10 Gene

Localization for RPS15AP10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP10 Gene

Pathways & Interactions for RPS15AP10 Gene

SuperPathways for RPS15AP10 Gene

No Data Available

Interacting Proteins for RPS15AP10 Gene

Gene Ontology (GO) - Biological Process for RPS15AP10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15AP10 Gene

Drugs & Compounds for RPS15AP10 Gene

No Compound Related Data Available

Transcripts for RPS15AP10 Gene

mRNA/cDNA for RPS15AP10 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS15AP10 Gene

Ribosomal protein S15a pseudogene 10:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPS15AP10
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP10 Gene

No ASD Table

Relevant External Links for RPS15AP10 Gene

GeneLoc Exon Structure for
RPS15AP10
ECgene alternative splicing isoforms for
RPS15AP10

Expression for RPS15AP10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15AP10 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS15AP10 Gene:

RPS15AP10

SOURCE GeneReport for Unigene cluster for RPS15AP10 Gene:

Hs.675157
genes like me logo Genes that share expression patterns with RPS15AP10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP10 Gene

Orthologs for RPS15AP10 Gene

Evolution for RPS15AP10 Gene

ENSEMBL:
Gene Tree for RPS15AP10 (if available)
TreeFam:
Gene Tree for RPS15AP10 (if available)

No data available for Orthologs for RPS15AP10 Gene

Paralogs for RPS15AP10 Gene

No data available for Paralogs for RPS15AP10 Gene

Variants for RPS15AP10 Gene

Sequence variations from dbSNP and Humsavar for RPS15AP10 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000288893 -- 45,646,015(+) GTTCA(C/T)AATTT intron-variant, nc-transcript-variant
rs1000509784 -- 45,647,244(+) TGGCT(C/T)ACTGC intron-variant, upstream-variant-2KB
rs1001087630 -- 45,647,949(+) TTTTC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs1001296274 -- 45,646,490(+) CTGGC(C/T)ATCCT intron-variant, nc-transcript-variant
rs1002403748 -- 45,648,592(+) AAGCC(C/T)CTTAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPS15AP10 Gene

Variant ID Type Subtype PubMed ID
esv3893512 CNV gain 25118596
nsv1014128 CNV gain 25217958

Relevant External Links for RPS15AP10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS15AP10 Gene

Disorders for RPS15AP10 Gene

Relevant External Links for RPS15AP10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS15AP10

No disorders were found for RPS15AP10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS15AP10 Gene

Publications for RPS15AP10 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPS15AP10 Gene

Sources for RPS15AP10 Gene

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