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Aliases for RPS15AP10 Gene

Subcategory (RNA class) for RPS15AP10 Gene

lncRNA

Aliases for RPS15AP10 Gene

  • Ribosomal Protein S15a Pseudogene 10 2 3 5
  • RPS15A_4_42 3

External Ids for RPS15AP10 Gene

ORGUL Members for RPS15AP10 Gene

Previous GeneCards Identifiers for RPS15AP10 Gene

  • GC01U902301
  • GC01M046111
  • GC01M044222

Summaries for RPS15AP10 Gene

GeneCards Summary for RPS15AP10 Gene

RPS15AP10 (Ribosomal Protein S15a Pseudogene 10) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS15AP10 Gene

Genomics for RPS15AP10 Gene

Regulatory Elements for RPS15AP10 Gene

Enhancers for RPS15AP10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G045302 1.2 ENCODE 31.2 +342.5 342498 2.7 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D ZNF610 TOE1 RPL7AP16 RPS15AP10 GPBP1L1 TMEM69 RPS8 ZSWIM5 CCDC163 PTCH2 POMGNT1
GH01G046130 1.2 ENCODE 22.6 -486.6 -486617 5.6 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 TOE1 GPBP1L1 RPL7AP16 CCDC163 MAST2 EFCAB14-AS1 RPS15AP10 TMEM69 ZSWIM5 TSPAN1
GH01G044720 1.7 Ensembl ENCODE dbSUPER 13.1 +923.9 923882 4.8 MLX CREB3L1 AGO1 ZFP64 FEZF1 YBX1 YY1 ZNF143 SP3 NFYC GPBP1L1 TOE1 RPS8 RPL7AP16 RPS15AP10 DMAP1 TMEM69 RPS15AP11 SNORD38B UROD
GH01G046170 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -526.6 -526644 5.0 HDGF PKNOX1 ATF1 SIN3A ZNF121 GLIS2 YY2 ZHX2 REST TBX21 TOE1 NSUN4 LURAP1 ZSWIM5 RPL7AP16 RPS15AP10 CCDC163 PRDX1 TSPAN1 LOC101929626
GH01G044774 1.4 ENCODE dbSUPER 13.1 +870.5 870467 3.7 CREB3L1 AGO1 ZFP64 DMAP1 YBX1 YY1 ZNF143 SP3 MCM3 NFYC GPBP1L1 TOE1 RPS8 DMAP1 ZSWIM5 RPL7AP16 RPS15AP10 TMEM69 LOC101929609 PTCH2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS15AP10 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS15AP10 Gene

Chromosome:
1
Start:
45,645,772 bp from pter
End:
45,646,685 bp from pter
Size:
914 bases
Orientation:
Minus strand

Genomic View for RPS15AP10 Gene

Genes around RPS15AP10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP10 Gene

Proteins for RPS15AP10 Gene

Post-translational modifications for RPS15AP10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP10 Gene

Domains & Families for RPS15AP10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15AP10 Gene

Function for RPS15AP10 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP10 Gene

Localization for RPS15AP10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS15AP10 Gene

Pathways & Interactions for RPS15AP10 Gene

SuperPathways for RPS15AP10 Gene

No Data Available

Interacting Proteins for RPS15AP10 Gene

Gene Ontology (GO) - Biological Process for RPS15AP10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15AP10 Gene

Transcripts for RPS15AP10 Gene

mRNA/cDNA for RPS15AP10 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS15AP10 Gene

Ribosomal protein S15a pseudogene 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP10 Gene

No ASD Table

Relevant External Links for RPS15AP10 Gene

GeneLoc Exon Structure for
RPS15AP10
ECgene alternative splicing isoforms for
RPS15AP10

Expression for RPS15AP10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15AP10 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS15AP10 Gene:

RPS15AP10

SOURCE GeneReport for Unigene cluster for RPS15AP10 Gene:

Hs.675157
genes like me logo Genes that share expression patterns with RPS15AP10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP10 Gene

Orthologs for RPS15AP10 Gene

Evolution for RPS15AP10 Gene

ENSEMBL:
Gene Tree for RPS15AP10 (if available)
TreeFam:
Gene Tree for RPS15AP10 (if available)

No data available for Orthologs for RPS15AP10 Gene

Paralogs for RPS15AP10 Gene

No data available for Paralogs for RPS15AP10 Gene

Variants for RPS15AP10 Gene

Sequence variations from dbSNP and Humsavar for RPS15AP10 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000288893 -- 45,646,015(+) GTTCA(C/T)AATTT intron-variant, nc-transcript-variant
rs1000509784 -- 45,647,244(+) TGGCT(C/T)ACTGC intron-variant, upstream-variant-2KB
rs1001087630 -- 45,647,949(+) TTTTC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs1001296274 -- 45,646,490(+) CTGGC(C/T)ATCCT intron-variant, nc-transcript-variant
rs1002403748 -- 45,648,592(+) AAGCC(C/T)CTTAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPS15AP10 Gene

Variant ID Type Subtype PubMed ID
esv3893512 CNV gain 25118596
nsv1014128 CNV gain 25217958

Relevant External Links for RPS15AP10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS15AP10 Gene

Disorders for RPS15AP10 Gene

Relevant External Links for RPS15AP10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS15AP10

No disorders were found for RPS15AP10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS15AP10 Gene

Publications for RPS15AP10 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS15AP10 Gene

Sources for RPS15AP10 Gene

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