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Aliases for RPS14P3 Gene

Aliases for RPS14P3 Gene

  • Ribosomal Protein S14 Pseudogene 3 2 3
  • RP5-1056L3.3 5
  • RPS14_1_16 3

External Ids for RPS14P3 Gene

Previous GeneCards Identifiers for RPS14P3 Gene

  • GC01P019808
  • GC01P019936

Summaries for RPS14P3 Gene

Entrez Gene Summary for RPS14P3 Gene

  • This gene is one of the multiple ribosomal protein S14-like genes that are dispersed throughout the genome. This gene is intronless and is a pseudogene of the spliced and functional ribosomal protein S14 gene that is located on chromosome 5. This intronless gene is transcribed and probably does not encode a functional protein. [provided by RefSeq, Feb 2013]

GeneCards Summary for RPS14P3 Gene

RPS14P3 (Ribosomal Protein S14 Pseudogene 3) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS14P3 Gene

Genomics for RPS14P3 Gene

Regulatory Elements for RPS14P3 Gene

Enhancers for RPS14P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F020324 0.9 Ensembl ENCODE 5.9 +718.0 718001 1.8 ZNF316 ZNF366 SCRT2 ZEB2 REST ZBTB40 MAFK ATF2 NR2C2 VWA5B1 RPS14P3 CAMK2N1 ENSG00000226664 GC01P020350
GH01F019599 1.3 FANTOM5 Ensembl 0.4 -8.0 -8006 1.6 ELF3 MLX ARID4B DMAP1 RAD21 THRB ZNF48 RARA SLC30A9 GATA4 NBL1 AKR7A2 TMCO4 MINOS1 MINOS1-NBL1 RPS14P3
GH01F019619 1.2 Ensembl ENCODE 0.4 +12.4 12358 0.9 ELF3 ATF1 MLX ARID4B DMAP1 RARA GATA4 GATA2 CREM MIXL1 LOC105378614 MINOS1 RNU4-28P RPS14P3 NBL1
GH01F019595 1.1 ENCODE 0.4 -10.7 -10718 3.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 MUL1 NBL1 AKR7A2 MINOS1 MINOS1-NBL1 RPS14P3
GH01F019606 0.4 ENCODE 0.8 -0.8 -806 0.2 ZNF316 TCF7 RPS14P3 MINOS1 MINOS1-NBL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS14P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS14P3 Gene

Chromosome:
1
Start:
19,607,807 bp from pter
End:
19,608,644 bp from pter
Size:
838 bases
Orientation:
Plus strand

Genomic View for RPS14P3 Gene

Genes around RPS14P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS14P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS14P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS14P3 Gene

Proteins for RPS14P3 Gene

Post-translational modifications for RPS14P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS14P3 Gene

Domains & Families for RPS14P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS14P3 Gene

Function for RPS14P3 Gene

Phenotypes for RPS14P3 Gene

GenomeRNAi human phenotypes for RPS14P3:
genes like me logo Genes that share phenotypes with RPS14P3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS14P3 Gene

Localization for RPS14P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS14P3 Gene

Pathways & Interactions for RPS14P3 Gene

SuperPathways for RPS14P3 Gene

No Data Available

Interacting Proteins for RPS14P3 Gene

Gene Ontology (GO) - Biological Process for RPS14P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS14P3 Gene

Transcripts for RPS14P3 Gene

mRNA/cDNA for RPS14P3 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS14P3 Gene

Ribosomal protein S14 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS14P3 Gene

No ASD Table

Relevant External Links for RPS14P3 Gene

GeneLoc Exon Structure for
RPS14P3
ECgene alternative splicing isoforms for
RPS14P3

Expression for RPS14P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS14P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS14P3 Gene:

RPS14P3

SOURCE GeneReport for Unigene cluster for RPS14P3 Gene:

Hs.660760
genes like me logo Genes that share expression patterns with RPS14P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS14P3 Gene

Orthologs for RPS14P3 Gene

Evolution for RPS14P3 Gene

ENSEMBL:
Gene Tree for RPS14P3 (if available)
TreeFam:
Gene Tree for RPS14P3 (if available)

No data available for Orthologs for RPS14P3 Gene

Paralogs for RPS14P3 Gene

No data available for Paralogs for RPS14P3 Gene

Variants for RPS14P3 Gene

Sequence variations from dbSNP and Humsavar for RPS14P3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111258045 -- 19,608,085(+) TTTCC(C/G)GTGTG intron-variant, nc-transcript-variant
rs112417651 -- 19,608,121(+) GGCAC(A/C)TGGAA intron-variant, nc-transcript-variant
rs112761161 -- 19,608,506(+) GAGGA(C/T)GTCAC intron-variant, nc-transcript-variant
rs113009700 -- 19,608,123(+) CACCT(C/G)GAAAG intron-variant, nc-transcript-variant
rs113135871 -- 19,608,495(+) TCGGG(A/C)GGATT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPS14P3 Gene

Variant ID Type Subtype PubMed ID
nsv945809 CNV duplication 23825009
nsv508991 CNV insertion 20534489
nsv1011246 CNV gain 25217958
esv1007512 OTHER inversion 20482838

Relevant External Links for RPS14P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS14P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS14P3 Gene

Disorders for RPS14P3 Gene

Relevant External Links for RPS14P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS14P3

No disorders were found for RPS14P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS14P3 Gene

Publications for RPS14P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Functional analysis of human RPS14 null alleles. (PMID: 9152021) Martin-Nieto J. … Roufa D.J. (J. Cell. Sci. 1997) 3 64

Products for RPS14P3 Gene

Sources for RPS14P3 Gene

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