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RPS13 Gene

protein-coding   GIFtS: 65
GCID: GC11M017095

Ribosomal Protein S13

  Search for RPS13
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Ribosomal Protein S131 2
40S Ribosomal Protein S131 2
S132

External Ids:    HGNC: 103861   Entrez Gene: 62072   Ensembl: ENSG000001107007   OMIM: 1804765   UniProtKB: P622773   
ORGUL members:         

Export aliases for RPS13 gene to outside databases

Previous GC identifers: GC11M018166 GC11M018039 GC11M017135 GC11M017060 GC11M017054 GC11M017055 GC11M016780


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RPS13 Gene:
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit.
Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This
gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S15P family
of ribosomal proteins. It is located in the cytoplasm. The protein has been shown to bind to the 5.8S rRNA in
rat. The gene product of the E. coli ortholog (ribosomal protein S15) functions at early steps in ribosome
assembly. This gene is co-transcribed with two U14 small nucleolar RNA genes, which are located in its third and
fifth introns. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of
this gene dispersed through the genome. (provided by RefSeq, Jul 2008)

GeneCards Summary for RPS13 Gene:
RPS13 (ribosomal protein S13) is a protein-coding gene. GO annotations related to this gene include structural constituent of ribosome and mRNA binding.

Gene Wiki entry for RPS13 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_009237.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the RPS13 gene promoter:
         Nkx3-1   AP-2rep   p53   AP-1   Nkx3-1 v1   YY1   GATA-1   Nkx3-1 v2   Ik-2   Nkx3-1 v3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRPS13 promoter sequence
   Search Chromatin IP Primers for RPS13

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPS13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15   Ensembl cytogenetic band:  11p15.1   HGNC cytogenetic band: 11p

RPS13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RPS13 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M017095:  view genomic region     (about GC identifiers)

Start:
17,095,936 bp from pter      End:
17,099,334 bp from pter
Size:
3,399 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RS13_HUMAN, P62277 (See protein sequence)
Recommended Name: 40S ribosomal protein S13  
Size: 151 amino acids; 17222 Da
1 PDB 3D structure from and Proteopedia for RPS13:
3J3A (3D)    
Secondary accessions: B2R549 P19116 Q02546 Q29200 Q498Y0

Explore the universe of human proteins at neXtProt for RPS13: NX_P62277

Explore proteomics data for RPS13 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys9, Lys27, Lys34, Lys39, Lys43, Lys70, Lys78
  • Modification sites at PhosphoSitePlus

  • See RPS13 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001008.1  
    ENSEMBL proteins: 
     ENSP00000228140   ENSP00000435777   ENSP00000432096  
    Reactome Protein details: P62277

    RPS13 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RPS: S ribosomal proteins

    4 InterPro protein domains:
     IPR023029 Ribosomal_S15P
     IPR012606 Ribosomal_S13/S15_N
     IPR000589 Ribosomal_S15
     IPR009068 S15_NS1_RNA-bd

    Graphical View of Domain Structure for InterPro Entry P62277

    ProtoNet protein and cluster: P62277

    1 Blocks protein domain: IPB012606 Ribosomal S13S15 N-terminal

    UniProtKB/Swiss-Prot: RS13_HUMAN, P62277
    Similarity: Belongs to the ribosomal protein S15P family


    Find genes that share domains with RPS13           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for RPS13:
    60S ribosomal protein S13

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003729mRNA binding IDA17881366
    GO:0003735structural constituent of ribosome IEA--
    GO:0005515protein binding IPI12054647
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with RPS13           About GenesLikeMe


    Phenotypes:
         7 GenomeRNAi human phenotypes for RPS13:
     Decreased Hepatitis C virus re  Decreased cell number  Decreased viability  Decreased viability of wild-ty 
     Increased cell number in G2M,   Nuclear 40S maturation defects  Nucleolar pre-40S maturation d 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for RPS13
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       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for RPS13

    miRNA
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    miRTarBase miRNAs that target RPS13:
    hsa-let-7a-5p (MIRT052501), hsa-mir-218-5p (MIRT046992), hsa-let-7c-5p (MIRT051802)

    Block miRNA regulation of human, mouse, rat RPS13 using miScript Target Protectors
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol5
    nucleus5
    mitochondrion1

    Gene Ontology (GO): Selected cellular component terms (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IDA17881366
    GO:0005730nucleolus IDA17881366
    GO:0005829cytosol TAS--
    GO:0005840ribosome NAS8332508

    Find genes that share ontologies with RPS13           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for RPS13 About   (see all 7)  
    See pathways by source

    SuperPathSelected contained pathways About (see all per SuperPath)
    1CFTR translational fidelity class I mutations
    CFTR translational fidelity class I mutations 0.60
    Ribosome0.54
    Cytoplasmic Ribosomal Proteins0.60
    2Influenza Viral RNA Transcription and Replication
    Viral mRNA Translation0.94
    Eukaryotic Translation Initiation0.89
    Peptide chain elongation0.94
    Cap-dependent Translation Initiation0.89
    Nonsense Mediated Decay Independent of the Exon Junction Complex0.94
    Nonsense Mediated Decay Enhanced by the Exon Junction Complex0.89
    Formation of a pool of free 40S subunits0.94
    Nonsense-Mediated Decay0.89
    3Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
    Translation initiation complex formation0.91
    Ribosomal scanning and start codon recognition0.91
    Formation of the ternary complex, and subsequently, the 43S complex0.91
    Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S0.90
    4Gene Expression
    Gene Expression0.40
    5Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
    Metabolism of proteins0.30


    Find genes that share SuperPaths with RPS13           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 GeneGo (Thomson Reuters) Pathway for RPS13
        CFTR translational fidelity (class I mutations)

    2 BioSystems Pathways for RPS13
        TNF-alpha/NF-kB Signaling Pathway
    Cytoplasmic Ribosomal Proteins


    Selected Reactome Pathways for RPS13 (see all 12)
        Peptide chain elongation
    Formation of the ternary complex, and subsequently, the 43S complex
    Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
    Viral mRNA Translation
    GTP hydrolysis and joining of the 60S ribosomal subunit


    1 Kegg Pathway  (Kegg details for RPS13):
        Ribosome

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RPS13
    Interactions:

        GeneGlobe Interaction Network for RPS13

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RPS13 (P622771, 2, 3 ENSP000002281404) via UniProtKB, MINT, STRING, and/or I2D (see all 1126)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCP0CG482, 3, ENSP000003448184MINT-6542674 MINT-6489539 MINT-6488791 I2D: score=3 STRING: ENSP00000344818
    RPL8P629172, 3, ENSP000002625844MINT-6542674 MINT-6489539 MINT-6488791 I2D: score=2 STRING: ENSP00000262584
    RPL11P629132, 3, ENSP000003636764MINT-6542674 MINT-6489539 MINT-6488791 I2D: score=1 STRING: ENSP00000363676
    RPL12P300502, 3, ENSP000003547394MINT-6542674 MINT-6489539 MINT-6488791 I2D: score=1 STRING: ENSP00000354739
    RPL13P263732, 3, ENSP000003078894MINT-6542674 MINT-7947479 MINT-6488791 I2D: score=1 STRING: ENSP00000307889
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 14):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS--
    GO:0006412translation TAS--
    GO:0006413translational initiation TAS--
    GO:0006414translational elongation TAS--
    GO:0006415translational termination TAS--

    Find genes that share ontologies with RPS13           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RPS13 (RS13)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RPS13 gene: 
    NM_001017.2  

    Unigene Cluster for RPS13:

    Ribosomal protein S13
    Hs.446588  [show with all ESTs]
    Unigene Representative Sequence: BE621497
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000531008 ENST00000531908 ENST00000228140 ENST00000526895 ENST00000525634(uc001mmp.3)
    ENST00000525828 ENST00000533969 ENST00000527571 ENST00000534329 ENST00000528074

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      QuantiTect SYBR Green Assays in human, mouse, rat RPS13
      QuantiFast Probe-based Assays in human, mouse, rat RPS13

    Additional mRNA sequence: 

    AK312060.1 BC000475.1 BC006772.1 BC029732.1 BC066322.1 BC100032.1 L01124.1 L05090.1 
    X79239.1 

    Selected DOTS entries (see all 45):

    DT.100034195  DT.91780893  DT.91780905  DT.100060141  DT.95377158  DT.97814138  DT.100689183  DT.120736380 
    DT.100689171  DT.120736387  DT.100689181  DT.120736393  DT.100060137  DT.121431383  DT.100689168  DT.100689186 
    DT.120736385  DT.120736420  DT.121431378  DT.421641  DT.85101328  DT.91780895  DT.100689175  DT.120736415 

    Selected AceView cDNA sequences (see all 1408):

    BQ637792 AA664797 BQ879436 BU789291 BU625492 BM741601 BQ432432 BM799019 
    BE258513 AI720395 AA331024 BU146792 BQ029243 BP429196 BC029732 CA431313 
    AA187255 AI720886 AA953225 AA302134 BI493905 BE251501 BU679483 AA962005 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for RPS13    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6
    SP1:                                                                        
    SP2:                                      -     -     -                     
    SP3:                                                                        
    SP4:                                                                        
    SP5:                                                                        


    ECgene alternative splicing isoforms for RPS13

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RPS13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGTTGCACA
    RPS13 Expression
    About this image


    RPS13 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 22) fully expand
     
     Ovary (Reproductive System)
             Primary Oocyte Primary Follicle
     
     Gonad
             Primary Oocyte Primary Follicle
     
     Brain (Nervous System)
             Cerebral Cortex
     
     Bone (Muscoskeletal System)
             Bone Marrow
     
     Endoderm (Gastrulation Derivatives)
             Endoderm-like cells
    RPS13 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RPS13 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.446588
        Custom PCR Arrays for RPS13
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPS13

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RPS13 gene from Selected species (see all 29)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rps131 , 5 ribosomal protein S131, 5 86.98(n)1
    100(a)1
      7 (61.61 cM)5
    680521  NM_026533.31  NP_080809.11 
     1163315075 
    chicken
    (Gallus gallus)
    Aves RPS131 ribosomal protein S13 81.68(n)
    100(a)
      414782  NM_001001783.1  NP_001001783.1 
    lizard
    (Anolis carolinensis)
    Reptilia RPS136
    ribosomal protein S13
    100(a)
    1 ↔ 1
    1(66622601-66629484)
    African clawed frog
    (Xenopus laevis)
    Amphibia rps13-prov2 ribosomal protein S13 81.14(n)    BC056028.1 
    zebrafish
    (Danio rerio)
    Actinopterygii 570848262   -- 78.84(n)    57084826 
    fruit fly
    (Drosophila melanogaster)
    Insecta RpS131 , 3 protein biosynthesis structural
    constituent of more3
    Ribosomal protein S131
    87(a)3
    71.08(n)1
    87.42(a)1
      2 29B23
    341491  NM_057590.41  NP_476938.11 
    worm
    (Caenorhabditis elegans)
    Secernentea rps-131 , 3 40S ribosomal protein S133
    rps-131
    76(a)3
    68.43(n)1
    76.16(a)1
      III(6445813-6446906)3
    1759011  NM_065992.51  NP_498393.11 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RPS13(YDR064W)4
    RPS131
    Protein component of the small (40S) ribosomal subunit; more4
    RPS131
    66.22(n)1
    78(a)1
      4(579458-580452)4
    8516361, 4  NP_010349.31  NP_010349.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RPS13A1 RPS13A 66(n)
    78.81(a)
      828167  NM_116227.3  NP_567151.1 
    rice
    (Oryza sativa)
    Liliopsida Os.151682 Oryza sativa (japonica cultivar-group) cDNA clone0 more 71.08(n)    AK059505.1 


    ENSEMBL Gene Tree for RPS13 (if available)
    TreeFam Gene Tree for RPS13 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RPS13 gene
    Selected SIMAP similar genes for RPS13 using alignment to 3 protein entries:     RS13_HUMAN (see all proteins) (see all similar genes):
    RRM2B    EIF3G    LSM12    C12orf76    UBXN4    ADCK1
    EIF3K    DOCK8    TNNT1    FLJ00047    ZNF799    EEF1E1
    GALK2    PFKFB3    C21orf37    DYNC2LI1    COQ5    VPS33A

    Find genes that share paralogs with RPS13           About GenesLikeMe


    Selected Pseudogenes.org Pseudogenes for RPS13 (see all 11)
    PGOHUM00000246797 PGOHUM00000247118 PGOHUM00000244031 PGOHUM00000245058 PGOHUM00000239991


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RPS13 (see all 37)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs110241471,2
    C,F,A,H--17095565(+) ATTACT/GTTTGC 1 -- ds500110Minor allele frequency- G:0.20NS EA WA CSA 786
    rs169248991,2
    C,F,H--17095596(+) TCTGAT/CGCTAC 1 -- ds500127Minor allele frequency- C:0.18NA NS EA CSA WA EU 3425
    rs1882470661,2
    --17095686(+) ATGACA/GCCAAA 1 -- ds50010--------
    rs1168494251,2
    C,F--17095699(+) AAACAC/AAAAGG 1 -- ds50011Minor allele frequency- A:0.02EA 120
    rs728708891,2
    C,F--17099600(+) ACTAGA/TTCCCT 1 -- us2k12Minor allele frequency- T:0.01NA NS 270
    rs169338231,2
    C,F,H--17099613(+) GAGTCG/AGCCCT 1 -- us2k121Minor allele frequency- A:0.17NA NS EA WA 2630
    rs1932727781,2
    C--17099615(+) GTCGGC/TCCTGC 1 -- us2k10--------
    rs605342231,2
    C,F--17099803(+) TGCCTG/ACCGCC 1 -- us2k11Minor allele frequency- A:0.50WA 2
    rs1141697421,2
    F--17099857(+) CTCGCC/TGGGGA 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs110241501,2
    C,F,A--17100265(+) CGCCTC/GGGCCT 1 -- us2k11Minor allele frequency- G:0.02NS 150

    HapMap Linkage Disequilibrium report for RPS13 (17095936 - 17099334 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for RPS13:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv467711CNV Gain19166990

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RPS13
    DNA2.0 Custom Variant and Variant Library Synthesis for RPS13

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 180476    OMIM disorders: --


    Find genes that share disorders with RPS13           About GenesLikeMe

    1 Novoseek inferred disease relationship for RPS13 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 0 2 16761435 (2)


    Export disorders for RPS13 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RPS13 gene, integrated from 10 sources (see all 81) (see top 10):
    (articles sorted by number of sources associating them with RPS13)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and analysis of the human S13 ribosomal protein cDNA. (PubMed id 8332508)1, 2, 3 Chadeneau C.... Denis M.G. (Nucleic Acids Res. 1993)
    2. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)1, 2 Rush J.... Comb M.J. (Nat. Biotechnol. 2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. A map of 75 human ribosomal protein genes. (PubMed id 9582194)1, 3 Kenmochi N.... Page D.C. (Genome Res. 1998)
    5. Characterization of the human small-ribosomal-subunit proteins by N- terminal and internal sequencing, and mass spectrometry. (PubMed id 8706699)1, 2 Vladimirov S.N.... Otto A. (Eur. J. Biochem. 1996)
    6. U14 snoRNAs are encoded in introns of human ribosomal protein S13 gene. (PubMed id 8920921)1, 2 Kenmochi N.... Tanaka T. (Biochem. Biophys. Res. Commun. 1996)
    7. Human ribosomal protein S13 regulates expression of its own gene at the splicing step by a feedback mechanism. (PubMed id 17881366)1, 9 Malygin A.A....Karpova G.G. (Nucleic Acids Res. 2007)
    8. Human ribosomal protein S13: cloning, expression, refolding, and structural stability. (PubMed id 15680243)1, 9 Malygin A....Karpova G. (Biochim. Biophys. Acta 2005)
    9. Ribosomal proteins S13 and L23 promote multidrug resistance in gastric cancer cells by suppressing drug-induced apoptosis. (PubMed id 15149863)1, 9 Shi Y....Fan D. (Exp. Cell Res. 2004)
    10. The intracellular interactome of tetraspanin-enriched microdomains reveals their function as sorting machineries toward exosomes. (PubMed id 23463506)1 Perez-Hernandez D....YA!A+ez-MA^ M. (J. Biol. Chem. 2013)
    11. Structures of the human and Drosophila 80S ribosome. (PubMed id 23636399)2 Anger A.M.... Beckmann R. (Nature 2013)
    12. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    13. VCP phosphorylation-dependent interaction partners prevent apoptosis in Helicobacter pylori-infected gastric epithelial cells. (PubMed id 23383273)1 Yu C.C....Chow L.P. (PLoS ONE 2013)
    14. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (Nat. Methods 2013)
    15. Deubiquitinase FAM/USP9X interacts with the E3 ubiquitin ligase SMURF1 protein and protects it from ligase activity-dependent self-degradation. (PubMed id 23184937)1 Xie Y....Cong F. (J. Biol. Chem. 2013)
    16. The human EKC/KEOPS complex is recruited to Cullin2 ubiquitin ligases by the human tumour antigen PRAME. (PubMed id 22912744)1 Costessi A....Stunnenberg H.G. (PLoS ONE 2012)
    17. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    18. Proteomic analysis of I+4I^1 integrin adhesion complexes reveals I+-subunit-dependent protein recruitment. (PubMed id 22623428)1 Byron A....Humphries M.J. (Proteomics 2012)
    19. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    20. The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925)1 Aichem A....Groettrup M. (J. Cell. Sci. 2012)
    21. A yeast two-hybrid screen reveals that osteopontin associates with MAP1A and MAP1B in addition to other proteins linked to microtubule stability, apoptosis and protein degradation in the human brain. (PubMed id 22779921)1 Long P....Rose S. (Eur. J. Neurosci. 2012)
    22. A cohesin-RAD21 interactome. (PubMed id 22145905)1 Panigrahi A.K....Pati D. (Biochem. J. 2012)
    23. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    24. Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47. (PubMed id 22354994)1 Teachenor R....Murre C. (Mol. Cell. Biol. 2012)
    25. Shotgun proteomics and network analysis of ubiquitin-related proteins from human breast carcinoma epithelial cells. (PubMed id 21853274)1 Zhou J....Liang S. (Mol. Cell. Biochem. 2012)
    26. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    27. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    28. Human ribosomal protein S13 promotes gastric cancer growth through down-regulating p27(Kip1). (PubMed id 19912438)1 Guo X....Fan D. (J. Cell. Mol. Med. 2011)
    29. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    30. Identification of proteins associated with ligand-activated estrogen receptor I+ in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS. (PubMed id 21182205)1 Tarallo R....Weisz A. (Proteomics 2011)
    31. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    32. Global identification of modular cullin-RING ligase substrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (Cell 2011)
    33. An important role for CDK2 in G1 to S checkpoint activation and DNA damage response in human embryonic stem cells. (PubMed id 21319273)1 Neganova I....Lako M. (Stem Cells 2011)
    34. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    35. [Binding of human ribosomal protein S13 to the central domain of 18S rRNA]. (PubMed id 22295575)1 Ivanov A.V....Karpova G.G. (Mol. Biol. (Mosk.) 2011)
    36. Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. (PubMed id 20639865)1 Xu G....Jaffrey S.R. (Nat. Biotechnol. 2010)
    37. Transmembrane receptor DCC associates with protein synthesis machinery and regulates translation. (PubMed id 20434207)1 Tcherkezian J....Flanagan J.G. (Cell 2010)
    38. Quantitative nanoproteomics for protein complexes (QNanoPX) related to estrogen transcriptional action. (PubMed id 19805454)1 Cheng P.C....Chen S.H. (amp 2010)
    39. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (Cell 2010)
    40. Proteomics analysis of nucleolar SUMO-1 target proteins upon proteasome inhibition. (PubMed id 19596686)1 Matafora V....Bachi A. (amp 2009)
    41. Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6. (PubMed id 19738201)1 Humphries J.D....Humphries M.J. (Sci Signal 2009)
    42. Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861)2 Choudhary C.... Mann M. (Science 2009)
    43. Ribosomal proteins are targets for the NEDD8 pathway. (PubMed id 18274552)1 Xirodimas D.P....Hay R.T. (EMBO Rep. 2008)
    44. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)2 Daub H.... Mann M. (Mol. Cell 2008)
    45. Identification of intracellular proteins associated with the EBV-encoded nuclear antigen 5 using an efficient TAP procedure and FT-ICR mass spectrometry. (PubMed id 18457437)1 Forsman A....Rymo L. (J. Proteome Res. 2008)
    46. Functional specialization of beta-arrestin interactions revealed by proteomic analysis. (PubMed id 17620599)1 Xiao K....Lefkowitz R.J. (Proc. Natl. Acad. Sci. U.S.A. 2007)
    47. 14-3-3sigma controls mitotic translation to facilitate cytokinesis. (PubMed id 17361185)1 Wilker E.W....Yaffe M.B. (Nature 2007)
    48. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (Cell 2006)
    49. Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes. (PubMed id 15883184)1 Yu Y....Leary J.A. (Protein Sci. 2005)
    50. Large-scale analysis of the human ubiquitin-related proteome. (PubMed id 16196087)1 Matsumoto M....Nakayama K.I. (Proteomics 2005)
    51. Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes. (PubMed id 16051665)1 Jung S.Y....Qin J. (Mol. Endocrinol. 2005)
    52. Proteomic analysis of SRm160-containing complexes reveals a conserved association with cohesin. (PubMed id 16159877)1 McCracken S....Blencowe B.J. (J. Biol. Chem. 2005)
    53. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    54. The molecular mechanics of eukaryotic translation. (PubMed id 15189156)1 Kapp L.D. and Lorsch J.R. (Annu. Rev. Biochem. 2004)
    55. A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. (PubMed id 14743216)1 Bouwmeester T....Superti-Furga G. (Nat. Cell Biol. 2004)
    56. Transcript-selective translational silencing by gamma interferon is directed by a novel structural element in the ceruloplasmin mRNA 3' untranslated region. (PubMed id 12588972)1 Sampath P....Fox P.L. (Mol. Cell. Biol. 2003)
    57. Use of RNA interference and complementation to study the function of the Drosophila and human 26S proteasome subunit S13. (PubMed id 12861018)1 Lundgren J....Young P. (Mol. Cell. Biol. 2003)
    58. Up-regulation of PDCD4 in senescent human diploid fibroblasts. (PubMed id 12054647)1 Kang M.J....Park W.Y. (Biochem. Biophys. Res. Commun. 2002)
    59. Directed proteomic analysis of the human nucleolus. (PubMed id 11790298)1 Andersen J.S.... Lamond A.I. (Curr. Biol. 2002)
    60. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    61. Mapping of genes and transcribed sequences in a gene rich 400-kb region on human chromosome 11p15.1--&gt;p14. (PubMed id 11306805)1 Caldwell G.M....Shows T.B. (Cytogenet. Cell Genet. 2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 6207 HGNC: 10386 AceView: RPS13 Ensembl:ENSG00000110700 euGenes: HUgn6207
    ECgene: RPS13 Kegg: 6207 H-InvDB: RPS13

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RPS13 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RPS13 gene:
    Search GeneIP for patents involving RPS13

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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