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Aliases for RPS12P20 Gene

Subcategory (RNA class) for RPS12P20 Gene

antisense

Aliases for RPS12P20 Gene

  • Ribosomal Protein S12 Pseudogene 20 2 3 5
  • RPS12_10_1153 3

External Ids for RPS12P20 Gene

ORGUL Members for RPS12P20 Gene

Previous GeneCards Identifiers for RPS12P20 Gene

  • GC11U901252
  • GC11P072420

Summaries for RPS12P20 Gene

GeneCards Summary for RPS12P20 Gene

RPS12P20 (Ribosomal Protein S12 Pseudogene 20) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS12P20 Gene

Genomics for RPS12P20 Gene

Regulatory Elements for RPS12P20 Gene

Enhancers for RPS12P20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F072750 0.6 ENCODE 12.2 +44.3 44273 4.0 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 ZNF121 GLIS2 ELK1 ARAP1 RPS12P20 ARAP1-AS2 STARD10 PIR40050
GH11F072748 0.2 ENCODE 12.2 +41.2 41234 1.7 ELF3 TBP MLX ARID4B BMI1 THRB ZNF48 RAD21 RARA ZNF121 ARAP1 STARD10 RPS12P20 ARAP1-AS2 PIR40050
GH11F072821 0.2 ENCODE 12.2 +114.2 114212 1.6 SIN3A ZNF2 GLIS2 ELK1 SP3 GTF2B TBX21 ZNF592 SMARCA4 GLIS1 LOC100133315 OR7E128P ENSG00000257038 LOC100128494 ARAP1 RPS12P20 ARAP1-AS2 RNU6-672P ARAP1-AS1 INPPL1
GH11F072805 0.8 ENCODE 12 +99.1 99112 2.8 CTCF ESRRA SAP130 ZMYM3 CEBPG RAD21 YY1 ZNF316 ZBTB48 PRDM10 STARD10 RPS12P20 ARAP1-AS2 ATG16L2
GH11F072804 0.2 Ensembl 12 +96.4 96415 0.4 RPS12P20 ARAP1-AS2 ATG16L2 STARD10
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPS12P20 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPS12P20 Gene

Chromosome:
11
Start:
72,708,186 bp from pter
End:
72,708,565 bp from pter
Size:
380 bases
Orientation:
Plus strand

Genomic View for RPS12P20 Gene

Genes around RPS12P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS12P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS12P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS12P20 Gene

Proteins for RPS12P20 Gene

Post-translational modifications for RPS12P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS12P20 Gene

Domains & Families for RPS12P20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS12P20 Gene

Function for RPS12P20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS12P20 Gene

Localization for RPS12P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS12P20 Gene

Pathways & Interactions for RPS12P20 Gene

SuperPathways for RPS12P20 Gene

No Data Available

Interacting Proteins for RPS12P20 Gene

Gene Ontology (GO) - Biological Process for RPS12P20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS12P20 Gene

Transcripts for RPS12P20 Gene

mRNA/cDNA for RPS12P20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS12P20 Gene

No ASD Table

Relevant External Links for RPS12P20 Gene

GeneLoc Exon Structure for
RPS12P20
ECgene alternative splicing isoforms for
RPS12P20

Expression for RPS12P20 Gene

mRNA expression in normal human tissues for RPS12P20 Gene

mRNA differential expression in normal tissues according to GTEx for RPS12P20 Gene

This gene is overexpressed in Whole Blood (x7.6).

NURSA nuclear receptor signaling pathways regulating expression of RPS12P20 Gene:

RPS12P20
genes like me logo Genes that share expression patterns with RPS12P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPS12P20 Gene

Orthologs for RPS12P20 Gene

Evolution for RPS12P20 Gene

ENSEMBL:
Gene Tree for RPS12P20 (if available)
TreeFam:
Gene Tree for RPS12P20 (if available)

No data available for Orthologs for RPS12P20 Gene

Paralogs for RPS12P20 Gene

No data available for Paralogs for RPS12P20 Gene

Variants for RPS12P20 Gene

Relevant External Links for RPS12P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS12P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS12P20 Gene

Disorders for RPS12P20 Gene

No disorders were found for RPS12P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS12P20 Gene

Publications for RPS12P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS12P20 Gene

Sources for RPS12P20 Gene

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