Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS11P6 Gene

Aliases for RPS11P6 Gene

  • Ribosomal Protein S11 Pseudogene 6 2 3 5
  • RPS11_2_1249 3

External Ids for RPS11P6 Gene

Previous GeneCards Identifiers for RPS11P6 Gene

  • GC12P063077
  • GC12P064747
  • GC12P064617

Summaries for RPS11P6 Gene

GeneCards Summary for RPS11P6 Gene

RPS11P6 (Ribosomal Protein S11 Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS11P6 Gene

Genomics for RPS11P6 Gene

Regulatory Elements for RPS11P6 Gene

Enhancers for RPS11P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G064180 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -40.7 -40716 3.2 PKNOX1 SIN3A RAD21 SMARCC2 FOS ZNF654 ZNF174 SMARCC1 CEBPB NR2F2 LEMD3 RNU6-1009P RPS11P6 C12orf66 GC12P064205 ENSG00000255629
GH12G064186 1.2 Ensembl ENCODE dbSUPER 11.2 -34.7 -34713 2.0 PKNOX1 SMARCC1 JUN ZSCAN4 JUNB EP300 ZKSCAN1 JUND EED PBX2 RPS11P6 C12orf66 ENSG00000255629 GC12P064205
GH12G064450 1.1 ENCODE 10.9 +230.0 230031 3.6 PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 XPOT RPS11P6 TBK1 ENSG00000277895
GH12G064177 0.9 ENCODE dbSUPER 10.8 -43.9 -43948 2.5 BHLHE40 MAFG NR2F2 JUND ZNF316 MAFF GATA2 FOS MAFK PRDM1 RNU6-1009P RPS11P6 GC12P064205 ENSG00000255629
GH12G064252 0.8 Ensembl ENCODE 11.5 +30.6 30574 1.0 ZSCAN4 ZNF133 CEBPB CEBPG RPS11P6 RNU6-1009P XPOT ENSG00000255629 C12orf56 ENSG00000256192 C12orf66
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPS11P6 on UCSC Golden Path with GeneCards custom track

Promoters for RPS11P6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000053156 -137 1600 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for RPS11P6 Gene

Chromosome:
12
Start:
64,222,337 bp from pter
End:
64,397,065 bp from pter
Size:
174,729 bases
Orientation:
Plus strand

Genomic View for RPS11P6 Gene

Genes around RPS11P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS11P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS11P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS11P6 Gene

Proteins for RPS11P6 Gene

Post-translational modifications for RPS11P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS11P6 Gene

Domains & Families for RPS11P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS11P6 Gene

Function for RPS11P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS11P6 Gene

Localization for RPS11P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPS11P6 Gene

Pathways & Interactions for RPS11P6 Gene

SuperPathways for RPS11P6 Gene

No Data Available

Interacting Proteins for RPS11P6 Gene

Gene Ontology (GO) - Biological Process for RPS11P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS11P6 Gene

Transcripts for RPS11P6 Gene

mRNA/cDNA for RPS11P6 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS11P6 Gene

No ASD Table

Relevant External Links for RPS11P6 Gene

GeneLoc Exon Structure for
RPS11P6
ECgene alternative splicing isoforms for
RPS11P6

Expression for RPS11P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS11P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS11P6 Gene

This gene is overexpressed in Testis (x17.9).

NURSA nuclear receptor signaling pathways regulating expression of RPS11P6 Gene:

RPS11P6
genes like me logo Genes that share expression patterns with RPS11P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS11P6 Gene

Orthologs for RPS11P6 Gene

Evolution for RPS11P6 Gene

ENSEMBL:
Gene Tree for RPS11P6 (if available)
TreeFam:
Gene Tree for RPS11P6 (if available)

No data available for Orthologs for RPS11P6 Gene

Paralogs for RPS11P6 Gene

No data available for Paralogs for RPS11P6 Gene

Variants for RPS11P6 Gene

Relevant External Links for RPS11P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS11P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS11P6 Gene

Disorders for RPS11P6 Gene

Relevant External Links for RPS11P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPS11P6

No disorders were found for RPS11P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS11P6 Gene

Publications for RPS11P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPS11P6 Gene

Sources for RPS11P6 Gene

Content
Loading form....