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Aliases for RPS11 Gene

Aliases for RPS11 Gene

  • Ribosomal Protein S11 2 3
  • 40S Ribosomal Protein S11 2 3
  • S11 3

External Ids for RPS11 Gene

Summaries for RPS11 Gene

Entrez Gene Summary for RPS11 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a member of the S17P family of ribosomal proteins that is a component of the 40S subunit. This gene is co-transcribed with the small nucleolar RNA gene U35B, which is located in the third intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed throughout the genome. [provided by RefSeq, Jul 2012]

GeneCards Summary for RPS11 Gene

RPS11 (Ribosomal Protein S11) is a Protein Coding gene. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include structural constituent of ribosome and rRNA binding.

Gene Wiki entry for RPS11 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS11 Gene

Genomics for RPS11 Gene

Genomic Location for RPS11 Gene

Start:
49,496,365 bp from pter
End:
49,499,712 bp from pter
Size:
3,348 bases
Orientation:
Plus strand

Genomic View for RPS11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPS11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS11 Gene

Regulatory Elements for RPS11 Gene

Proteins for RPS11 Gene

  • Protein details for RPS11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62280-RS11_HUMAN
    Recommended name:
    40S ribosomal protein S11
    Protein Accession:
    P62280
    Secondary Accessions:
    • B2R4F5
    • P04643
    • Q498Y6
    • Q6IRY0

    Protein attributes for RPS11 Gene

    Size:
    158 amino acids
    Molecular mass:
    18431 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPS11 Gene

neXtProt entry for RPS11 Gene

Proteomics data for RPS11 Gene at MOPED

Post-translational modifications for RPS11 Gene

  • Citrullinated by PADI4.
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys12, Lys30, Lys32, Lys38, Lys59, and Lys136

Other Protein References for RPS11 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for RPS11 Gene

Domains for RPS11 Gene

Gene Families for RPS11 Gene

HGNC:
  • RPS :S ribosomal proteins

Protein Domains for RPS11 Gene

Suggested Antigen Peptide Sequences for RPS11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P62280

UniProtKB/Swiss-Prot:

RS11_HUMAN
Family:
  • Belongs to the ribosomal protein S17P family.:
    • P62280
genes like me logo Genes that share domains with RPS11: view

Function for RPS11 Gene

Molecular function for RPS11 Gene

GENATLAS Biochemistry: 40S ribosomal protein S11,18kDa

Gene Ontology (GO) - Molecular Function for RPS11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IBA --
GO:0005515 protein binding IPI 24725412
GO:0019843 rRNA binding IEA --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with RPS11: view
genes like me logo Genes that share phenotypes with RPS11: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPS11 Gene

Localization for RPS11 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPS11 Gene COMPARTMENTS Subcellular localization image for RPS11 gene
Compartment Confidence
cytosol 5
chloroplast 2
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RPS11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005730 nucleolus IDA 16791210
GO:0005737 cytoplasm IDA 16791210
GO:0005829 cytosol TAS --
GO:0005840 ribosome NAS 3267208
genes like me logo Genes that share ontologies with RPS11: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPS11 Gene

Pathways for RPS11 Gene

SuperPathways for RPS11 Gene

Superpath Contained pathways
1 Influenza Viral RNA Transcription and Replication
2 Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
3 CFTR translational fidelity (class I mutations)
.54
4 Disease
5 Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
genes like me logo Genes that share pathways with RPS11: view

Pathways by source for RPS11 Gene

1 GeneGo (Thomson Reuters) pathway for RPS11 Gene

Gene Ontology (GO) - Biological Process for RPS11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0001649 osteoblast differentiation --
GO:0006412 translation TAS --
GO:0006413 translational initiation TAS --
GO:0006414 translational elongation TAS --
genes like me logo Genes that share ontologies with RPS11: view

Transcripts for RPS11 Gene

mRNA/cDNA for RPS11 Gene

(1) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS11 Gene

Ribosomal protein S11:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPS11 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5
SP1: - - -
SP2: - -
SP3: -
SP4: - -
SP5:

Relevant External Links for RPS11 Gene

GeneLoc Exon Structure for
RPS11
ECgene alternative splicing isoforms for
RPS11

Expression for RPS11 Gene

mRNA expression in normal human tissues for RPS11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RPS11 Gene

SOURCE GeneReport for Unigene cluster for RPS11 Gene Hs.433529

genes like me logo Genes that share expressions with RPS11: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPS11 Gene

Orthologs for RPS11 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPS11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPS11 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RPS11 35
  • 91.98 (n)
  • 99.37 (a)
RPS11 36
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RPS11 35
  • 90.72 (n)
  • 100 (a)
RPS11 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rps11 35
  • 90.08 (n)
  • 100 (a)
Rps11 16
Rps11 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RPS11 36
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RPS11 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rps11 35
  • 90.3 (n)
  • 100 (a)
chicken
(Gallus gallus)
Aves RPS11 35
  • 86.71 (n)
  • 98.1 (a)
RPS11 36
  • 96 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPS11 36
  • 99 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia rps11-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia rps11 35
  • 85.23 (n)
  • 96.84 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8696 35
zebrafish
(Danio rerio)
Actinopterygii Dr.1339 35
rps11 35
  • 81.86 (n)
  • 91.77 (a)
rps11 36
  • 91 (a)
OneToMany
RPS11 (2 of 2) 36
  • 72 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta RS11_ANOGA 35
  • 71.46 (n)
  • 77.12 (a)
fruit fly
(Drosophila melanogaster)
Insecta RpS11 35
  • 69.68 (n)
  • 72.9 (a)
RpS11 36
  • 70 (a)
OneToOne
CG8857 37
  • 71 (a)
worm
(Caenorhabditis elegans)
Secernentea rps-11 35
  • 66 (n)
  • 68.21 (a)
rps-11 36
  • 65 (a)
OneToOne
rps-11 37
  • 68 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ABL091C 35
  • 66.89 (n)
  • 71.14 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPS11A 35
  • 66.44 (n)
  • 73.15 (a)
RPS11A 36
  • 69 (a)
OneToMany
RPS11A 38
RPS11B 36
  • 69 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A10483g 35
  • 65.1 (n)
  • 71.14 (a)
soybean
(Glycine max)
eudicotyledons Gma.13177 35
thale cress
(Arabidopsis thaliana)
eudicotyledons RPS11-BETA 35
  • 62.5 (n)
  • 65.28 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.837 35
rice
(Oryza sativa)
Liliopsida Os.9405 35
Os04g0502300 35
  • 63.49 (n)
  • 63.27 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.1289 35
bread mold
(Neurospora crassa)
Ascomycetes NCU03102 35
  • 65.37 (n)
  • 64.29 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rps1102 35
  • 65.98 (n)
  • 67.81 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7405 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7869 36
  • 74 (a)
OneToOne
Species with no ortholog for RPS11:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPS11 Gene

ENSEMBL:
Gene Tree for RPS11 (if available)
TreeFam:
Gene Tree for RPS11 (if available)

Paralogs for RPS11 Gene

genes like me logo Genes that share paralogs with RPS11: view

No data available for Paralogs for RPS11 Gene

Variants for RPS11 Gene

Sequence variations from dbSNP and Humsavar for RPS11 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs739349 -- 49,499,350(+) CAAAA(C/T)TTGTA intron-variant
rs756628 -- 49,499,429(+) GCCTT(C/T)AGCCT intron-variant
rs939349 -- 49,498,672(+) TTGAG(C/G)CCAGA intron-variant
rs2009984 -- 49,498,620(-) ggcac(A/T)tgcta intron-variant
rs2077300 -- 49,499,996(-) GTCAG(A/G)AAAGA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RPS11 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
nsv912261 CNV Loss 21882294
nsv912262 CNV Loss 21882294
nsv912264 CNV Loss 21882294
nsv833862 CNV Loss 17160897
nsv912265 CNV Loss 21882294
nsv833863 CNV Loss 17160897

Relevant External Links for RPS11 Gene

HapMap Linkage Disequilibrium report
RPS11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPS11 Gene

Disorders for RPS11 Gene

Relevant External Links for RPS11

Genetic Association Database (GAD)
RPS11
genes like me logo Genes that share disorders with RPS11: view

No data available for UniProtKB/Swiss-Prot for RPS11 Gene

Publications for RPS11 Gene

  1. A map of 75 human ribosomal protein genes. (PMID: 9582194) Kenmochi N. … Page D.C. (Genome Res. 1998) 2 3 4
  2. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S. … Kenmochi N. (Gene 1999) 3 4
  3. The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome. (PMID: 1577483) Feo S. … Fried M. (Genomics 1992) 2 3
  4. Sequence of a cloned cDNA encoding human ribosomal protein S11. (PMID: 3267208) Lott J.B. … Mackie G.A. (Nucleic Acids Res. 1988) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for RPS11 Gene

Sources for RPS11 Gene

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