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Aliases for RPS10P11 Gene

Subcategory (RNA class) for RPS10P11 Gene

lncRNA

Aliases for RPS10P11 Gene

  • Ribosomal Protein S10 Pseudogene 11 2 3
  • RPS10_6_615 3
  • AC109454.1 5

External Ids for RPS10P11 Gene

ORGUL Members for RPS10P11 Gene

Previous GeneCards Identifiers for RPS10P11 Gene

  • GC05P133787
  • GC05P133759

Summaries for RPS10P11 Gene

GeneCards Summary for RPS10P11 Gene

RPS10P11 (Ribosomal Protein S10 Pseudogene 11) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS10P11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS10P11 Gene

Genomics for RPS10P11 Gene

GeneHancer (GH) Regulatory Elements for RPS10P11 Gene

Promoters and enhancers for RPS10P11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I134521 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.7 +102.7 102699 7.3 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 JADE2 RNU6-456P RPS10P11 CDKN2AIPNL ENSG00000248559 LINC01843 ENSG00000280420 GC05M134520
GH05I134508 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +88.0 87999 4.6 HDGF PKNOX1 FOXA2 ZFP64 ARID4B NEUROD1 DMAP1 ZBTB7B YY1 ZNF766 C5orf24 DDX46 RPS10P11 CDKN2AIPNL ENSG00000248559 CATSPER3 SKP1 LINC01843 CAMLG RN7SL541P
GH05I134503 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +82.7 82709 5.5 FOXA2 PKNOX1 CLOCK MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 FOS LINC01843 RPS10P11 CDKN2AIPNL ENSG00000248559 CAMLG JADE2 RNU6-456P
GH05I134543 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +122.0 122010 3.3 RB1 IRF4 ZNF143 BCLAF1 IKZF2 RUNX3 EGR2 SMARCA5 CBFB ELF1 JADE2 RPS10P11 CDKN2AIPNL ENSG00000248559 TXNDC15 CDKL3 PCBD2 GC05M134520 GC05M134578
GH05I134450 Enhancer 1 Ensembl ENCODE dbSUPER 12.5 +28.9 28852 2 JUN CEBPB RAD21 ZNF335 FOSL1 JUND NFIC POLR2A FOSL2 FOS RPS10P11 CDKN2AIPNL JADE2 ENSG00000248559 LOC102546229 ENSG00000250994
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS10P11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS10P11 Gene

Genomic Locations for RPS10P11 Gene
chr5:134,422,825-134,423,335
(GRCh38/hg38)
Size:
511 bases
Orientation:
Plus strand
chr5:133,758,516-133,759,026
(GRCh37/hg19)

Genomic View for RPS10P11 Gene

Genes around RPS10P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS10P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS10P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS10P11 Gene

Proteins for RPS10P11 Gene

Post-translational modifications for RPS10P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS10P11 Gene

Domains & Families for RPS10P11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS10P11 Gene

Function for RPS10P11 Gene

Phenotypes From GWAS Catalog for RPS10P11 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS10P11 Gene

Localization for RPS10P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS10P11 Gene

Pathways & Interactions for RPS10P11 Gene

SuperPathways for RPS10P11 Gene

No Data Available

Interacting Proteins for RPS10P11 Gene

Gene Ontology (GO) - Biological Process for RPS10P11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS10P11 Gene

Drugs & Compounds for RPS10P11 Gene

No Compound Related Data Available

Transcripts for RPS10P11 Gene

mRNA/cDNA for RPS10P11 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS10P11 Gene

No ASD Table

Relevant External Links for RPS10P11 Gene

GeneLoc Exon Structure for
RPS10P11
ECgene alternative splicing isoforms for
RPS10P11

Expression for RPS10P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS10P11 Gene

mRNA differential expression in normal tissues according to GTEx for RPS10P11 Gene

This gene is overexpressed in Whole Blood (x12.6) and Testis (x8.9).

NURSA nuclear receptor signaling pathways regulating expression of RPS10P11 Gene:

RPS10P11
genes like me logo Genes that share expression patterns with RPS10P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS10P11 Gene

Orthologs for RPS10P11 Gene

Evolution for RPS10P11 Gene

ENSEMBL:
Gene Tree for RPS10P11 (if available)
TreeFam:
Gene Tree for RPS10P11 (if available)

No data available for Orthologs for RPS10P11 Gene

Paralogs for RPS10P11 Gene

No data available for Paralogs for RPS10P11 Gene

Variants for RPS10P11 Gene

Additional Variant Information for RPS10P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS10P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS10P11 Gene

Disorders for RPS10P11 Gene

Additional Disease Information for RPS10P11

Genetic Association Database
(GAD)

No disorders were found for RPS10P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS10P11 Gene

Publications for RPS10P11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58
  3. Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. (PMID: 21102462) Elks CE … Murray A (Nature genetics 2010) 44 58

Products for RPS10P11 Gene

Sources for RPS10P11 Gene

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