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Aliases for RPRML Gene

Aliases for RPRML Gene

  • Reprimo-Like 2 3

External Ids for RPRML Gene

Previous GeneCards Identifiers for RPRML Gene

  • GC17M042411
  • GC17M045055
  • GC17M040433

Summaries for RPRML Gene

GeneCards Summary for RPRML Gene

RPRML (Reprimo-Like) is a Protein Coding gene. An important paralog of this gene is RPRM.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPRML Gene

Genomics for RPRML Gene

Regulatory Elements for RPRML Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for RPRML Gene

Start:
46,978,156 bp from pter
End:
46,979,248 bp from pter
Size:
1,093 bases
Orientation:
Minus strand

Genomic View for RPRML Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPRML Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPRML Gene

Proteins for RPRML Gene

  • Protein details for RPRML Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4K4-RPRML_HUMAN
    Recommended name:
    Reprimo-like protein
    Protein Accession:
    Q8N4K4
    Secondary Accessions:

    Protein attributes for RPRML Gene

    Size:
    120 amino acids
    Molecular mass:
    12312 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPRML Gene

Proteomics data for RPRML Gene at MOPED

Post-translational modifications for RPRML Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RPRML Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RPRML Gene

Domains for RPRML Gene

Protein Domains for RPRML Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RPRML Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N4K4

UniProtKB/Swiss-Prot:

RPRML_HUMAN :
  • Q8N4K4
Family:
  • Belongs to the reprimo family.
genes like me logo Genes that share domains with RPRML: view

No data available for Gene Families for RPRML Gene

Function for RPRML Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RPRML

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPRML Gene

Localization for RPRML Gene

Subcellular locations from UniProtKB/Swiss-Prot for RPRML Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPRML Gene COMPARTMENTS Subcellular localization image for RPRML gene
Compartment Confidence
plasma membrane 2
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for RPRML Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RPRML: view

Pathways for RPRML Gene

SuperPathways for RPRML Gene

No Data Available

Interacting Proteins for RPRML Gene

Gene Ontology (GO) - Biological Process for RPRML Gene

None

No data available for Pathways by source for RPRML Gene

Transcripts for RPRML Gene

mRNA/cDNA for RPRML Gene

(8) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPRML Gene

Reprimo-like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RPRML

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RPRML

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPRML Gene

No ASD Table

Relevant External Links for RPRML Gene

GeneLoc Exon Structure for
RPRML
ECgene alternative splicing isoforms for
RPRML

Expression for RPRML Gene

mRNA expression in normal human tissues for RPRML Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RPRML Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (10.4), Brain - Putamen (basal ganglia) (9.0), Brain - Caudate (basal ganglia) (6.8), Brain - Cortex (4.6), and Brain - Frontal Cortex (BA9) (4.5).

SOURCE GeneReport for Unigene cluster for RPRML Gene Hs.367999

genes like me logo Genes that share expressions with RPRML: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for RPRML Gene

Orthologs for RPRML Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPRML Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPRML 35
  • 98.89 (n)
  • 99.17 (a)
RPRML 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RPRML 35
  • 90.56 (n)
  • 90 (a)
RPRML 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RPRML 35
  • 92.22 (n)
  • 92.5 (a)
RPRML 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rprml 35
  • 88.6 (n)
  • 88.03 (a)
Rprml 16
Rprml 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RPRML 36
  • 82 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rprml 35
  • 89.17 (n)
  • 88.03 (a)
chicken
(Gallus gallus)
Aves RPRML 35
  • 72.67 (n)
  • 71.17 (a)
RPRML 36
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPRML 36
  • 64 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rprml 35
  • 68.79 (n)
  • 62.73 (a)
rprml 36
  • 58 (a)
OneToOne
Species with no ortholog for RPRML:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RPRML Gene

ENSEMBL:
Gene Tree for RPRML (if available)
TreeFam:
Gene Tree for RPRML (if available)

Paralogs for RPRML Gene

Paralogs for RPRML Gene

Selected SIMAP similar genes for RPRML Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPRML: view

Variants for RPRML Gene

Sequence variations from dbSNP and Humsavar for RPRML Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs3048484 -- 46,978,401(+) AAAAA(-/A/AA)CTGGT utr-variant-3-prime
rs3072527 -- 46,978,394(-) TTTTT(-/TT)GTTTG utr-variant-3-prime
rs6146075 -- 46,980,683(+) AAAAA(-/A/AA)TTAGC upstream-variant-2KB
rs6504635 -- 46,980,460(+) AGGAG(A/C)CTTGT upstream-variant-2KB
rs7212161 -- 46,980,419(+) tctgt(C/T)ttctt upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPRML Gene

Variant ID Type Subtype PubMed ID
dgv976e1 CNV Complex 17122850
esv2656635 CNV Deletion 23128226
nsv908562 CNV Gain 21882294
dgv986e1 CNV Complex 17122850
dgv41n68 CNV Loss 17160897

Relevant External Links for RPRML Gene

HapMap Linkage Disequilibrium report
RPRML

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPRML Gene

Disorders for RPRML Gene

No disorders were found for RPRML Gene.

No data available for UniProtKB/Swiss-Prot for RPRML Gene

Publications for RPRML Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for RPRML Gene

Sources for RPRML Gene

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