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Aliases for RPRML Gene

Aliases for RPRML Gene

  • Reprimo Like 2 3 5
  • Reprimo-Like 2

External Ids for RPRML Gene

Previous GeneCards Identifiers for RPRML Gene

  • GC17M042411
  • GC17M045055
  • GC17M040433

Summaries for RPRML Gene

GeneCards Summary for RPRML Gene

RPRML (Reprimo Like) is a Protein Coding gene. An important paralog of this gene is RPRM.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPRML Gene

Genomics for RPRML Gene

Regulatory Elements for RPRML Gene

Enhancers for RPRML Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G047002 1.2 Ensembl ENCODE 27.4 -22.1 -22054 0.6 WRNIP1 ARID4B ZNF2 ZNF48 SLC30A9 ELK1 ZNF143 KLF13 ZNF263 REST RPRML GOSR2 LOC101927060 PIR35727 PIR54173 GC17M046992
GH17G046983 1.1 ENCODE 17.2 -5.2 -5197 1.5 HDGF FOXA2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 RPRML GOSR2 ENSG00000266601 LOC101927060 PIR54173 GC17M046992 PIR35727
GH17G047069 1.5 Ensembl ENCODE 11.5 -92.0 -91956 4.4 CREB3L1 MLX AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF143 ARL17B MRPL45P2 KANSL1 LOC101927060 CDC27 ENSG00000266601 LRRC37A17P ENSG00000264701 RPS2P47 ENSG00000253347
GH17G047098 1.1 ENCODE 10.8 -120.6 -120592 2.5 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 FEZF1 ZBTB7B ZNF143 LOC101927060 KANSL1 MRPL45P2 ENSG00000264701 RPS2P47 ENSG00000266601 RPRML ARL17B MYL4 GC17M047078
GH17G047001 0.5 Ensembl 21.8 -22.7 -22653 0.2 ZNF362 ELF1 PRDM1 RPRML GOSR2 PIR35727 PIR54173 GC17M046992
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPRML on UCSC Golden Path with GeneCards custom track

Genomic Location for RPRML Gene

Chromosome:
17
Start:
46,978,156 bp from pter
End:
46,979,248 bp from pter
Size:
1,093 bases
Orientation:
Minus strand

Genomic View for RPRML Gene

Genes around RPRML on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPRML Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPRML Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPRML Gene

Proteins for RPRML Gene

  • Protein details for RPRML Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4K4-RPRML_HUMAN
    Recommended name:
    Reprimo-like protein
    Protein Accession:
    Q8N4K4

    Protein attributes for RPRML Gene

    Size:
    120 amino acids
    Molecular mass:
    12312 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPRML Gene

Post-translational modifications for RPRML Gene

No Post-translational modifications

Other Protein References for RPRML Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RPRML Gene

Domains & Families for RPRML Gene

Protein Domains for RPRML Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RPRML Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N4K4

UniProtKB/Swiss-Prot:

RPRML_HUMAN :
  • Belongs to the reprimo family.
Family:
  • Belongs to the reprimo family.
genes like me logo Genes that share domains with RPRML: view

No data available for Gene Families for RPRML Gene

Function for RPRML Gene

genes like me logo Genes that share phenotypes with RPRML: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPRML Gene

Localization for RPRML Gene

Subcellular locations from UniProtKB/Swiss-Prot for RPRML Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPRML gene
Compartment Confidence
plasma membrane 2
extracellular 1
mitochondrion 1
peroxisome 1
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for RPRML Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RPRML: view

Pathways & Interactions for RPRML Gene

SuperPathways for RPRML Gene

No Data Available

Interacting Proteins for RPRML Gene

Gene Ontology (GO) - Biological Process for RPRML Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPRML Gene

Drugs & Compounds for RPRML Gene

No Compound Related Data Available

Transcripts for RPRML Gene

mRNA/cDNA for RPRML Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPRML Gene

Reprimo-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPRML Gene

No ASD Table

Relevant External Links for RPRML Gene

GeneLoc Exon Structure for
RPRML
ECgene alternative splicing isoforms for
RPRML

Expression for RPRML Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPRML Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RPRML Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x10.4), Brain - Putamen (basal ganglia) (x9.0), Brain - Caudate (basal ganglia) (x6.8), Brain - Cortex (x4.6), and Brain - Frontal Cortex (BA9) (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of RPRML Gene:

RPRML

SOURCE GeneReport for Unigene cluster for RPRML Gene:

Hs.367999

Evidence on tissue expression from TISSUES for RPRML Gene

  • Nervous system(4.2)
  • Eye(4)
genes like me logo Genes that share expression patterns with RPRML: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPRML Gene

Orthologs for RPRML Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPRML Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPRML 34 35
  • 98.89 (n)
dog
(Canis familiaris)
Mammalia RPRML 34 35
  • 92.22 (n)
cow
(Bos Taurus)
Mammalia RPRML 34 35
  • 90.56 (n)
rat
(Rattus norvegicus)
Mammalia Rprml 34
  • 89.17 (n)
mouse
(Mus musculus)
Mammalia Rprml 34 16 35
  • 88.6 (n)
oppossum
(Monodelphis domestica)
Mammalia RPRML 35
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPRML 34 35
  • 72.67 (n)
lizard
(Anolis carolinensis)
Reptilia RPRML 35
  • 64 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rprml 34 35
  • 68.79 (n)
Species where no ortholog for RPRML was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RPRML Gene

ENSEMBL:
Gene Tree for RPRML (if available)
TreeFam:
Gene Tree for RPRML (if available)

Paralogs for RPRML Gene

Paralogs for RPRML Gene

(1) SIMAP similar genes for RPRML Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPRML: view

Variants for RPRML Gene

Sequence variations from dbSNP and Humsavar for RPRML Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1002579657 -- 46,980,757(+) GAACC(C/T)GGGAG upstream-variant-2KB
rs1002936054 -- 46,980,848(+) AAATA(A/G)AATAA upstream-variant-2KB
rs1003120786 -- 46,979,760(+) TAACT(G/T)TTTTT upstream-variant-2KB
rs1003487112 -- 46,980,864(+) AAAAG(-/A)AAAAA upstream-variant-2KB
rs1003561501 -- 46,979,514(+) AGGAT(G/T)TGATA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPRML Gene

Variant ID Type Subtype PubMed ID
dgv41n68 CNV loss 17160897
esv2656635 CNV deletion 23128226
esv2758692 CNV gain+loss 17122850
nsv1146669 OTHER inversion 26484159
nsv953917 CNV deletion 24416366

Variation tolerance for RPRML Gene

Residual Variation Intolerance Score: 49% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.91; 67.74% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPRML Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPRML

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPRML Gene

Disorders for RPRML Gene

Relevant External Links for RPRML

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPRML

No disorders were found for RPRML Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPRML Gene

Publications for RPRML Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPRML Gene

Sources for RPRML Gene

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