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Aliases for RPPH1-3P Gene

Subcategory (RNA class) for RPPH1-3P Gene

lncRNA

Aliases for RPPH1-3P Gene

  • Ribonuclease P RNA Component H1, 3 Pseudogene 2 3 5

External Ids for RPPH1-3P Gene

ORGUL Members for RPPH1-3P Gene

Previous GeneCards Identifiers for RPPH1-3P Gene

  • GC04M157910

Summaries for RPPH1-3P Gene

GeneCards Summary for RPPH1-3P Gene

RPPH1-3P (Ribonuclease P RNA Component H1, 3 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for RPPH1-3P Gene

  • RNase_P_RNA: The RNA component of Ribonuclease P (RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterised activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs.

View fRNAdb secondary structures for RPPH1-3P

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPPH1-3P Gene

Genomics for RPPH1-3P Gene

Genomic Location for RPPH1-3P Gene

Chromosome:
4
Start:
156,986,372 bp from pter
End:
156,986,693 bp from pter
Size:
322 bases
Orientation:
Minus strand

Genomic View for RPPH1-3P Gene

Genes around RPPH1-3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPPH1-3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPPH1-3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for RPPH1-3P Gene

ORGUL Member Location for RPPH1-3P gene

No data available for Regulatory Elements and RefSeq DNA sequence for RPPH1-3P Gene

Proteins for RPPH1-3P Gene

Post-translational modifications for RPPH1-3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPPH1-3P Gene

Domains & Families for RPPH1-3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPPH1-3P Gene

Function for RPPH1-3P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPPH1-3P Gene

Localization for RPPH1-3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPPH1-3P Gene

Pathways & Interactions for RPPH1-3P Gene

SuperPathways for RPPH1-3P Gene

No Data Available

Interacting Proteins for RPPH1-3P Gene

Gene Ontology (GO) - Biological Process for RPPH1-3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPPH1-3P Gene

Drugs & Compounds for RPPH1-3P Gene

No Compound Related Data Available

Transcripts for RPPH1-3P Gene

fRNAdb Secondary structures for RPPH1-3P Gene

  • NONHSAG039199

mRNA/cDNA for RPPH1-3P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPPH1-3P Gene

No ASD Table

Relevant External Links for RPPH1-3P Gene

GeneLoc Exon Structure for
RPPH1-3P
ECgene alternative splicing isoforms for
RPPH1-3P

Expression for RPPH1-3P Gene

mRNA expression in normal human tissues for RPPH1-3P Gene

genes like me logo Genes that share expression patterns with RPPH1-3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RPPH1-3P Gene

Orthologs for RPPH1-3P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPPH1-3P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RNaseP_nuc 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RNaseP_nuc 36
  • 44 (a)
OneToMany
RNaseP_nuc 36
  • 63 (a)
OneToMany
RNaseP_nuc 36
  • 51 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RNaseP_nuc 36
  • 51 (a)
OneToMany
RNaseP_nuc 36
  • 58 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25694 36
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RNaseP_nuc 36
  • 56 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia RNaseP_nuc 36
  • 51 (a)
OneToOne
chicken
(Gallus gallus)
Aves RNaseP_nuc 36
  • 46 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia RNaseP_nuc 36
  • 41 (a)
ManyToMany
RNaseP_nuc 36
  • 49 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii RNaseP_nuc 36
  • 46 (a)
ManyToMany
RNaseP_nuc 36
  • 47 (a)
ManyToMany
RNaseP_nuc 36
  • 47 (a)
ManyToMany
RNaseP_nuc 36
  • 43 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea RNaseP_nuc 36
  • 41 (a)
ManyToMany
RNaseP_nuc 36
  • 42 (a)
ManyToMany
Species with no ortholog for RPPH1-3P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RPPH1-3P Gene

ENSEMBL:
Gene Tree for RPPH1-3P (if available)
TreeFam:
Gene Tree for RPPH1-3P (if available)

Paralogs for RPPH1-3P Gene

No data available for Paralogs for RPPH1-3P Gene

Variants for RPPH1-3P Gene

Relevant External Links for RPPH1-3P Gene

HapMap Linkage Disequilibrium report
RPPH1-3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPPH1-3P Gene

Disorders for RPPH1-3P Gene

No disorders were found for RPPH1-3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPPH1-3P Gene

Publications for RPPH1-3P Gene

  1. Structural implications of novel diversity in eucaryal RNase P RNA. (PMID: 15811915) Marquez S.M. … Pace N.R. (RNA 2005) 1
  2. Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes. (PMID: 12045094) Xiao S. … Engelke D.R. (Annu. Rev. Biochem. 2002) 1
  3. Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA. (PMID: 11142387) Frank D.N. … Pace N.R. (RNA 2000) 1
  4. The Ribonuclease P Database. (PMID: 9847214) Brown J.W. (Nucleic Acids Res. 1999) 1
  5. Ribonuclease P: unity and diversity in a tRNA processing ribozyme. (PMID: 9759486) Frank D.N. … Pace N.R. (Annu. Rev. Biochem. 1998) 1

Products for RPPH1-3P Gene

Sources for RPPH1-3P Gene

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