RPP25 Gene
protein-coding GIFtS : 51
GCID: GC15 M075247
ribonuclease P/MRP 25kDa subunit (Previous name: ribonuclease P 25kDa subunit )
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Aliasesfor RPP25 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Ribonuclease P/MRP 25kDa Subunit 1 2 Ribonuclease P 25kDa Subunit1 2 RNase P Protein Subunit P252 3 FLJ203741 Ribonuclease P Protein Subunit P252 EC 3.1.26.53
Export aliases for RPP25 gene to outside databases Previous GC identifers: GC15M072964 GC15M073034 GC15M052044
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Summariesfor RPP25 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: RPP25_HUMAN, Q9BUL9 Function : Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their5'-ends. Also a component of RNase MRP. This subunit binds to RNA
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Genomic Viewsfor RPP25 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the RPP25 gene promoter: Max1 Spz1 p53 AP-1 ATF-2 Nkx5-1 NF-kappaB c-Jun Pax-4a NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for RPP25 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RPP25
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q24.2 Ensembl cytogenetic band: 15q24.2 HGNC cytogenetic band: 15q24.2 RPP25 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15M075247: view genomic region
(about GC identifiers )
Start:
75,246,757 bp from pter
End:
75,249,805 bp from pter
Size:
3,049 bases
Orientation:
minus strand
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Proteinsfor RPP25 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RPP25_HUMAN, Q9BUL9 (See
protein sequence )Recommended Name: Ribonuclease P protein subunit p25 Size : 199 amino acids; 20632 Da
Subunit : Component of nuclear RNase P and RNase MRP ribonucleoproteins. RNase P consists of a RNA moiety and at least 8protein subunits; POP1, RPP14, RPP20/POP7, RPP25, RPP29/POP4, RPP30, RPP38 and RPP40. Interacts with the P3 domain of RNase MRP complex. RNase MRP consists of a RNA moiety and at least 9 protein subunits; POP1, RPP14, RPP20/POP7, RPP25, RPP29/POP4, RPP30, RPP38, RPP40, POP5 and RPP21
Subcellular location : Nucleus
Secondary accessions : D3DW70 Q9NX88Explore the universe of human proteins at neXtProt for RPP25: NX_Q9BUL9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BUL9 RPP25 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_060263.2 ENSEMBL proteins: ENSP00000317691 ENSP00000446246 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
RPP25 for ontologies About GeneDecksing RPP25 Antibody Products: Assay Products for RPP25:
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Protein
Domains / Familiesfor RPP25 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
RPP25 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9BUL9 ProtoNet protein and cluster: Q9BUL9
1 Blocks protein family : IPB002775 Alba UniProtKB/Swiss-Prot: RPP25_HUMAN, Q9BUL9 Similarity : Belongs to the histone-like Alba family
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Functionfor RPP25 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RPP25_HUMAN, Q9BUL9 Function : Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their5'-ends. Also a component of RNase MRP. This subunit binds to RNA Catalytic activity : Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursorEnzyme Number (IUBMB): EC 3.1.26.5 1
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RPP25 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RPP25OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RPP25 (NM_017793 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RPP25 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RPP25
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPP25
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
RPP25 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for RPP25 :
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Pathways & Interactionsfor RPP25 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Ribosome biogenesis in eukaryotes 2 RNA transport
Pathway sources See GeneCards unified pathways Show all pathways 2
Kegg Pathways (Kegg details for RPP25) :
RPP25 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for RPP25 STRING Interaction
Network Preview (showing 5 interactants - click image to see 7)5/8 Interacting proteins for RPP25 (Q9BUL9 1 , 3 ENSP00000317691 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 8 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008033 tRNA processing
IEA --
RPP25 for ontologies About GeneDecksing
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Drugs & Compoundsfor RPP25 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RPP25 Search CenterWatch for drugs/clinical trials and news about RPP25
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Transcriptsfor RPP25 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
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SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for RPP25 gene: NM_017793.2 Unigene Cluster for RPP25:
Ribonuclease P/MRP 25kDa subunit Hs.8562 [show with all ESTs ] Unigene Representative Sequence: NM_017793 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000322177 (uc002azj.1 ) ENST00000499788 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RPP25 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RPP25OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: RPP25 (NM_017793 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RPP25 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RPP25
Additional cDNA sequence: BC002497.2 BC007270.1
6 DOTS entries : DT.100784701 DT.415545
DT.92444066 DT.121055790 DT.100765341 DT.95315606 24/232 AceView cDNA sequences (see all 232 ):
CR600222 BF683559 BQ216270 AA191103 BQ957194 BP340210 CK818970 BQ434687 CR619276 CK818971 BQ025449 BC002497 BM747322 BM808502 BQ064707 AA084656 BF001955 BM842493 BM843568 CR623184 BM980849 BI257840 BQ221947 H21196 GeneLoc Exon Structure
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Expression for RPP25 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RPP25 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GACCTTAAGG
About this image RPP25 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See RPP25 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for RPP25 SOURCE GeneReport for Unigene cluster: Hs.8562 SABiosciences Custom PCR Arrays for RPP25 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RPP25Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RPP25 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RPP25 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RPP25 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPP25
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Orthologsfor RPP25 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for RPP25 gene from 6/17 species (see all 17 ) About this table
ENSEMBL Gene Tree for RPP25 (if available)TreeFam Gene Tree for RPP25 (if available)
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Paralogsfor RPP25 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RPP25 gene RPP25L 2 1 SIMAP similar gene for RPP25 using alignment to 1 protein entry: RPP25_HUMAN :RPP25L
RPP25 for paralogs About GeneDecksing
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Genomic Variantsfor RPP25 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for RPP25 (75246757 - 75249805 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for RPP25 1 Inversion : 37170
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RPP25
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Disorders
/ Diseasesfor RPP25 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
RPP25 for disorders About GeneDecksing 3 diseases for RPP25 : About MalaCards cartilage-hair hypoplasia autism spectrum disorder malaria 1 disease from the University of Copenhagen DISEASES database for RPP25 :cartilage-hair hypoplasia Export disorders for RPP25 gene to outside databases
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Publicationsfor RPP25 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for RPP25 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with RPP25) Utopia : connect your pdf to the dynamic world of online information
Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P. (PubMed id 12003489) 1 , 2 , 3, 9 Guerrier-Takada C.... Altman S. (2002) Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex. (PubMed id 15096576) 1 , 2 Welting T.J.... Pruijn G.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883) 1 Kristensen A.R....Foster L.J. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Genome-wide YFP fluorescence complementation screen id entifies new regulators for telomere signaling in human cells. (PubMed id 21044950) 1 Lee O.H....Songyang Z. (2011) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231) 2 Olsen J.V....Mann M. (2010) RPP25 is developmentally regulated in prefrontal cort ex and expressed at decreased levels in autism spectrum disorder. (PubMed id 20632321) 1 Huang H.S....Akbarian S. (2010) Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA. (PubMed id 20215441) 1 Hands-Taylor K.L....Conte M.R. (2010)
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External Searches for RPP25 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RPP25 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RPP25 gene
(According to HUGE )
About This Section --
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Specialized Databases showing RPP25 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for RPP25 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for RPP25 gene: Search GeneIP for patents involving RPP25 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RPP25 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for RPP25 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for RPP25 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for RPP25 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for RPP25 OriGene 3'-UTR Clone for RPP25 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for RPP25 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for RPP25 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for RPP25 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for RPP25 OriGene Custom Protein Services for RPP25 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RPP25 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing RPP25 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat RPP25 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat RPP25 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat RPP25 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat RPP25
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RPP25 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPP25
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat RPP25
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Aliases for RPP25
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Expression for RPP25
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