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Aliases for RPLP1P6 Gene

Subcategory (RNA class) for RPLP1P6 Gene

lncRNA

Aliases for RPLP1P6 Gene

  • Ribosomal Protein Lateral Stalk Subunit P1 Pseudogene 6 2 3 5
  • Ribosomal Protein, Large, P1 Pseudogene 6 2 3
  • RPLP1_5_629 3
  • HCG1641617 3

External Ids for RPLP1P6 Gene

ORGUL Members for RPLP1P6 Gene

Previous GeneCards Identifiers for RPLP1P6 Gene

  • GC05M151127

Summaries for RPLP1P6 Gene

GeneCards Summary for RPLP1P6 Gene

RPLP1P6 (Ribosomal Protein Lateral Stalk Subunit P1 Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPLP1P6 Gene

Genomics for RPLP1P6 Gene

Regulatory Elements for RPLP1P6 Gene

Enhancers for RPLP1P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G151737 1.9 FANTOM5 Ensembl ENCODE dbSUPER 35.3 +24.3 24319 9.9 HDGF ATF1 PKNOX1 ARNT WRNIP1 SIN3A ARID4B YBX1 ZNF2 TCF12 RPLP1P6 ZNF300 G3BP1 ATOX1 SPARC GC05M151735 LOC105378235
GH05G151749 1.7 FANTOM5 Ensembl ENCODE dbSUPER 22.9 +15.9 15903 2.7 TBP USF1 ZBTB40 RELA ZNF121 CTBP1 POLR2A EED RELB IKZF2 RPLP1P6 SLC36A1 LOC105378235 GC05M151735
GH05G151769 1.4 ENCODE dbSUPER 27.2 -6.1 -6109 5.2 HDGF FOXA2 PKNOX1 MLX ARNT AGO1 ZFP64 WRNIP1 ARID4B SIN3A RPLP1P6 SMIM3 SPARC CCDC69 LOC105378231 LOC100652758 ATOX1
GH05G151692 2 FANTOM5 Ensembl ENCODE dbSUPER 14.8 +69.5 69504 9.5 HNRNPUL1 FOXA2 PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF300P1 RPLP1P6 ATOX1 G3BP1 SPARC CTB-113P19.1 LOC105378231 RN7SKP232
GH05G151753 1.3 ENCODE dbSUPER 20.2 +9.8 9771 6.0 HDGF PKNOX1 FOXA2 MLX CREB3L1 AGO1 ARID4B SIN3A FEZF1 ZNF2 RPLP1P6 LOC105378235
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPLP1P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPLP1P6 Gene

Chromosome:
5
Start:
151,765,859 bp from pter
End:
151,766,378 bp from pter
Size:
520 bases
Orientation:
Minus strand

Genomic View for RPLP1P6 Gene

Genes around RPLP1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPLP1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPLP1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPLP1P6 Gene

Proteins for RPLP1P6 Gene

Post-translational modifications for RPLP1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPLP1P6 Gene

Domains & Families for RPLP1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPLP1P6 Gene

Function for RPLP1P6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPLP1P6 Gene

Localization for RPLP1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPLP1P6 Gene

Pathways & Interactions for RPLP1P6 Gene

SuperPathways for RPLP1P6 Gene

No Data Available

Interacting Proteins for RPLP1P6 Gene

Gene Ontology (GO) - Biological Process for RPLP1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPLP1P6 Gene

Transcripts for RPLP1P6 Gene

mRNA/cDNA for RPLP1P6 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP1P6 Gene

No ASD Table

Relevant External Links for RPLP1P6 Gene

GeneLoc Exon Structure for
RPLP1P6
ECgene alternative splicing isoforms for
RPLP1P6

Expression for RPLP1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPLP1P6 Gene

mRNA expression in normal human tissues for RPLP1P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPLP1P6 Gene

This gene is overexpressed in Testis (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of RPLP1P6 Gene:

RPLP1P6
genes like me logo Genes that share expression patterns with RPLP1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPLP1P6 Gene

Orthologs for RPLP1P6 Gene

Evolution for RPLP1P6 Gene

ENSEMBL:
Gene Tree for RPLP1P6 (if available)
TreeFam:
Gene Tree for RPLP1P6 (if available)

No data available for Orthologs for RPLP1P6 Gene

Paralogs for RPLP1P6 Gene

No data available for Paralogs for RPLP1P6 Gene

Variants for RPLP1P6 Gene

Relevant External Links for RPLP1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPLP1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPLP1P6 Gene

Disorders for RPLP1P6 Gene

No disorders were found for RPLP1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPLP1P6 Gene

Publications for RPLP1P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for RPLP1P6 Gene

Sources for RPLP1P6 Gene

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