Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPLP0P6 Gene

Aliases for RPLP0P6 Gene

  • Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 6 2 3 5
  • Ribosomal Protein, Large, P0 Pseudogene 6 2 3
  • RPLP0_2_209 3

External Ids for RPLP0P6 Gene

Previous GeneCards Identifiers for RPLP0P6 Gene

  • GC02P038709

Summaries for RPLP0P6 Gene

GeneCards Summary for RPLP0P6 Gene

RPLP0P6 (Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 6) is a Pseudogene.

UniProtKB/Swiss-Prot for RPLP0P6 Gene

  • Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPLP0P6 Gene

Genomics for RPLP0P6 Gene

Regulatory Elements for RPLP0P6 Gene

Enhancers for RPLP0P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F038514 1.1 ENCODE 11.8 +33.6 33623 1.9 PKNOX1 ZNF48 CBX5 ELK1 FOS KDM4B REST ZNF518A SMARCB1 MEF2D LOC101929596 ATL2 CDC42EP3 RPLP0P6 SOS1 GC02M038108
GH02F038374 1 ENCODE 11.7 -104.9 -104918 3.9 MLX CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 ATL2 CDC42EP3 RPLP0P6 GC02P038367
GH02F038438 0.8 Ensembl 10.3 -42.9 -42875 0.6 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ATL2 GALM ENSG00000232518 RPLP0P6 LOC101929596 LINC01883
GH02F038238 0.7 ENCODE 10.2 -242.2 -242236 1.2 ZFP64 ARID4B FEZF1 RAD21 ZNF335 MIXL1 ZNF202 ZNF680 REST MIER2 SOS1 ASS1P2 ARHGEF33 PRKD3 RPLP0P6 ENSG00000229160 ATL2 LOC102723739 GC02P038231
GH02F037764 0.7 Ensembl ENCODE 10.2 -714.7 -714675 6.2 CTCF ESRRA SIN3A RAD21 ZNF316 CTBP1 NFE2 MAFK NFE2L2 NR3C1 ENSG00000272054 CEBPZ CDC42EP3 PRKD3 RPLP0P6 LOC344382 ENSG00000236572 GC02M037793
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPLP0P6 on UCSC Golden Path with GeneCards custom track

Promoters for RPLP0P6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001821692 226 799 HDGF CTCF MTA2 REST TBX21 SCRT2 IKZF1 TARDBP NBN MLLT1

Genomic Location for RPLP0P6 Gene

Chromosome:
2
Start:
38,481,775 bp from pter
End:
38,482,875 bp from pter
Size:
1,101 bases
Orientation:
Plus strand

Genomic View for RPLP0P6 Gene

Genes around RPLP0P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPLP0P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPLP0P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPLP0P6 Gene

Proteins for RPLP0P6 Gene

  • Protein details for RPLP0P6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHW5-RLA0L_HUMAN
    Recommended name:
    60S acidic ribosomal protein P0-like
    Protein Accession:
    Q8NHW5

    Protein attributes for RPLP0P6 Gene

    Size:
    317 amino acids
    Molecular mass:
    34364 Da
    Quaternary structure:
    • P0 forms a pentameric complex by interaction with dimers of P1 and P2.

neXtProt entry for RPLP0P6 Gene

Post-translational modifications for RPLP0P6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RPLP0P6 Gene

Domains & Families for RPLP0P6 Gene

Protein Domains for RPLP0P6 Gene

Suggested Antigen Peptide Sequences for RPLP0P6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NHW5

UniProtKB/Swiss-Prot:

RLA0L_HUMAN :
  • Belongs to the ribosomal protein L10P family.
Family:
  • Belongs to the ribosomal protein L10P family.
genes like me logo Genes that share domains with RPLP0P6: view

No data available for Gene Families for RPLP0P6 Gene

Function for RPLP0P6 Gene

Molecular function for RPLP0P6 Gene

UniProtKB/Swiss-Prot Function:
Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Gene Ontology (GO) - Molecular Function for RPLP0P6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003735 structural constituent of ribosome IBA --
GO:0070180 large ribosomal subunit rRNA binding IBA --
genes like me logo Genes that share ontologies with RPLP0P6: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPLP0P6 Gene

Localization for RPLP0P6 Gene

Gene Ontology (GO) - Cellular Components for RPLP0P6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0022625 cytosolic large ribosomal subunit IBA --
GO:0030687 preribosome, large subunit precursor IBA --
genes like me logo Genes that share ontologies with RPLP0P6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RPLP0P6 Gene

Pathways & Interactions for RPLP0P6 Gene

SuperPathways for RPLP0P6 Gene

No Data Available

Interacting Proteins for RPLP0P6 Gene

Selected Interacting proteins: Q8NHW5-RLA0L_HUMAN for RPLP0P6 Gene via IID

Gene Ontology (GO) - Biological Process for RPLP0P6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002181 cytoplasmic translation IBA --
GO:0008150 biological_process ND --
GO:0042254 ribosome biogenesis IEA --
genes like me logo Genes that share ontologies with RPLP0P6: view

No data available for Pathways by source and SIGNOR curated interactions for RPLP0P6 Gene

Transcripts for RPLP0P6 Gene

mRNA/cDNA for RPLP0P6 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP0P6 Gene

No ASD Table

Relevant External Links for RPLP0P6 Gene

GeneLoc Exon Structure for
RPLP0P6
ECgene alternative splicing isoforms for
RPLP0P6

Expression for RPLP0P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPLP0P6 Gene

Protein differential expression in normal tissues from HIPED for RPLP0P6 Gene

This gene is overexpressed in Liver (15.1), Ovary (13.2), and Liver, secretome (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPLP0P6 Gene



Protein tissue co-expression partners for RPLP0P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPLP0P6 Gene:

RPLP0P6
genes like me logo Genes that share expression patterns with RPLP0P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPLP0P6 Gene

Orthologs for RPLP0P6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPLP0P6 Gene

Organism Taxonomy Gene Similarity Type Details
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75771 34
Species where no ortholog for RPLP0P6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPLP0P6 Gene

ENSEMBL:
Gene Tree for RPLP0P6 (if available)
TreeFam:
Gene Tree for RPLP0P6 (if available)

Paralogs for RPLP0P6 Gene

(1) SIMAP similar genes for RPLP0P6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPLP0P6: view

No data available for Paralogs for RPLP0P6 Gene

Variants for RPLP0P6 Gene

Relevant External Links for RPLP0P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPLP0P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPLP0P6 Gene

Disorders for RPLP0P6 Gene

Relevant External Links for RPLP0P6

Genetic Association Database (GAD)
RPLP0P6

No disorders were found for RPLP0P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPLP0P6 Gene

Publications for RPLP0P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3 64
  3. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3 64
  4. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3 64
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64

Products for RPLP0P6 Gene

Sources for RPLP0P6 Gene

Content
Loading form....