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Aliases for RPLP0P6 Gene

Aliases for RPLP0P6 Gene

  • Ribosomal Protein, Large, P0 Pseudogene 6 2 3
  • RPLP0_2_209 3

External Ids for RPLP0P6 Gene

Previous GeneCards Identifiers for RPLP0P6 Gene

  • GC02P038709

Summaries for RPLP0P6 Gene

GeneCards Summary for RPLP0P6 Gene

RPLP0P6 (Ribosomal Protein, Large, P0 Pseudogene 6) is a Pseudogene. GO annotations related to this gene include structural constituent of ribosome.

UniProtKB/Swiss-Prot for RPLP0P6 Gene

  • Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPLP0P6 Gene

Genomics for RPLP0P6 Gene

Genomic Location for RPLP0P6 Gene

Start:
38,481,775 bp from pter
End:
38,482,875 bp from pter
Size:
1,101 bases
Orientation:
Plus strand

Genomic View for RPLP0P6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPLP0P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPLP0P6 Gene

No data available for Regulatory Elements for RPLP0P6 Gene

Proteins for RPLP0P6 Gene

  • Protein details for RPLP0P6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHW5-RLA0L_HUMAN
    Recommended name:
    60S acidic ribosomal protein P0-like
    Protein Accession:
    Q8NHW5
    Secondary Accessions:

    Protein attributes for RPLP0P6 Gene

    Size:
    317 amino acids
    Molecular mass:
    34364 Da
    Quaternary structure:
    • P0 forms a pentameric complex by interaction with dimers of P1 and P2.

neXtProt entry for RPLP0P6 Gene

Proteomics data for RPLP0P6 Gene at MOPED

Post-translational modifications for RPLP0P6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RPLP0P6 Gene

Domains for RPLP0P6 Gene

Gene Families for RPLP0P6 Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPLP0P6 Gene

Suggested Antigen Peptide Sequences for RPLP0P6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NHW5

UniProtKB/Swiss-Prot:

RLA0L_HUMAN :
  • Q8NHW5
Family:
  • Belongs to the ribosomal protein L10P family.
genes like me logo Genes that share domains with RPLP0P6: view

Function for RPLP0P6 Gene

Molecular function for RPLP0P6 Gene

UniProtKB/Swiss-Prot Function: Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Gene Ontology (GO) - Molecular Function for RPLP0P6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with RPLP0P6: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPLP0P6 Gene

Localization for RPLP0P6 Gene

Gene Ontology (GO) - Cellular Components for RPLP0P6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with RPLP0P6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RPLP0P6 Gene

Pathways for RPLP0P6 Gene

SuperPathways for RPLP0P6 Gene

No Data Available

Interacting Proteins for RPLP0P6 Gene

Gene Ontology (GO) - Biological Process for RPLP0P6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0042254 ribosome biogenesis IEA --
genes like me logo Genes that share ontologies with RPLP0P6: view

No data available for Pathways by source for RPLP0P6 Gene

Transcripts for RPLP0P6 Gene

mRNA/cDNA for RPLP0P6 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP0P6 Gene

No ASD Table

Relevant External Links for RPLP0P6 Gene

GeneLoc Exon Structure for
RPLP0P6
ECgene alternative splicing isoforms for
RPLP0P6

Expression for RPLP0P6 Gene

mRNA expression in normal human tissues for RPLP0P6 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for RPLP0P6 Gene

genes like me logo Genes that share expressions with RPLP0P6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPLP0P6 Gene

Orthologs for RPLP0P6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPLP0P6 Gene

Organism Taxonomy Gene Similarity Type Details
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75771 35
Species with no ortholog for RPLP0P6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPLP0P6 Gene

ENSEMBL:
Gene Tree for RPLP0P6 (if available)
TreeFam:
Gene Tree for RPLP0P6 (if available)

Paralogs for RPLP0P6 Gene

Selected SIMAP similar genes for RPLP0P6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPLP0P6: view

No data available for Paralogs for RPLP0P6 Gene

Variants for RPLP0P6 Gene

Relevant External Links for RPLP0P6 Gene

HapMap Linkage Disequilibrium report
RPLP0P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RPLP0P6 Gene

Disorders for RPLP0P6 Gene

Relevant External Links for RPLP0P6

Genetic Association Database (GAD)
RPLP0P6
genes like me logo Genes that share disorders with RPLP0P6: view

No data available for UniProtKB/Swiss-Prot for RPLP0P6 Gene

Publications for RPLP0P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
  2. Identification of SUMOylated proteins in neuroblastoma cells after treatment with hydrogen peroxide or ascorbate. (PMID: 21110914) Grant M.M. (BMB Rep 2010) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  4. Identification of ubiquitinated proteins from human multiple myeloma U266 cells by proteomics. (PMID: 22108332) Jia H. … He Q. (Biomed. Environ. Sci. 2011) 3
  5. Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes. (PMID: 22118674) Altun M. … Kessler B.M. (Chem. Biol. 2011) 3

Products for RPLP0P6 Gene

Sources for RPLP0P6 Gene

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