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Aliases for RPLP0P6 Gene

Aliases for RPLP0P6 Gene

  • Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 6 2 3
  • Ribosomal Protein, Large, P0 Pseudogene 6 2 3 5
  • RPLP0_2_209 3

External Ids for RPLP0P6 Gene

Previous GeneCards Identifiers for RPLP0P6 Gene

  • GC02P038709

Summaries for RPLP0P6 Gene

GeneCards Summary for RPLP0P6 Gene

RPLP0P6 (Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 6) is a Pseudogene.

UniProtKB/Swiss-Prot for RPLP0P6 Gene

  • Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPLP0P6 Gene

Genomics for RPLP0P6 Gene

Regulatory Elements for RPLP0P6 Gene

Enhancers for RPLP0P6 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RPLP0P6 on UCSC Golden Path with GeneCards custom track

Promoters for RPLP0P6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPLP0P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPLP0P6 Gene

Chromosome:
2
Start:
38,481,775 bp from pter
End:
38,482,875 bp from pter
Size:
1,101 bases
Orientation:
Plus strand

Genomic View for RPLP0P6 Gene

Genes around RPLP0P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPLP0P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPLP0P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPLP0P6 Gene

Proteins for RPLP0P6 Gene

  • Protein details for RPLP0P6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHW5-RLA0L_HUMAN
    Recommended name:
    60S acidic ribosomal protein P0-like
    Protein Accession:
    Q8NHW5

    Protein attributes for RPLP0P6 Gene

    Size:
    317 amino acids
    Molecular mass:
    34364 Da
    Quaternary structure:
    • P0 forms a pentameric complex by interaction with dimers of P1 and P2.

neXtProt entry for RPLP0P6 Gene

Proteomics data for RPLP0P6 Gene at MOPED

Post-translational modifications for RPLP0P6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RPLP0P6 Gene

Domains & Families for RPLP0P6 Gene

Protein Domains for RPLP0P6 Gene

Suggested Antigen Peptide Sequences for RPLP0P6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NHW5

UniProtKB/Swiss-Prot:

RLA0L_HUMAN :
  • Belongs to the ribosomal protein L10P family.
Family:
  • Belongs to the ribosomal protein L10P family.
genes like me logo Genes that share domains with RPLP0P6: view

No data available for Gene Families for RPLP0P6 Gene

Function for RPLP0P6 Gene

Molecular function for RPLP0P6 Gene

UniProtKB/Swiss-Prot Function:
Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPLP0P6 Gene

Localization for RPLP0P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPLP0P6 Gene

Pathways & Interactions for RPLP0P6 Gene

SuperPathways for RPLP0P6 Gene

No Data Available

Interacting Proteins for RPLP0P6 Gene

Gene Ontology (GO) - Biological Process for RPLP0P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPLP0P6 Gene

Drugs & Compounds for RPLP0P6 Gene

No Compound Related Data Available

Transcripts for RPLP0P6 Gene

mRNA/cDNA for RPLP0P6 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP0P6 Gene

No ASD Table

Relevant External Links for RPLP0P6 Gene

GeneLoc Exon Structure for
RPLP0P6
ECgene alternative splicing isoforms for
RPLP0P6

Expression for RPLP0P6 Gene

mRNA expression in normal human tissues for RPLP0P6 Gene

Protein differential expression in normal tissues from HIPED for RPLP0P6 Gene

This gene is overexpressed in Liver (15.1), Ovary (13.2), and Liver, secretome (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPLP0P6 Gene



genes like me logo Genes that share expression patterns with RPLP0P6: view

Protein tissue co-expression partners for RPLP0P6 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPLP0P6 Gene

Orthologs for RPLP0P6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RPLP0P6 Gene

Organism Taxonomy Gene Similarity Type Details
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75771 35
Species with no ortholog for RPLP0P6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPLP0P6 Gene

ENSEMBL:
Gene Tree for RPLP0P6 (if available)
TreeFam:
Gene Tree for RPLP0P6 (if available)

Paralogs for RPLP0P6 Gene

(1) SIMAP similar genes for RPLP0P6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPLP0P6: view

No data available for Paralogs for RPLP0P6 Gene

Variants for RPLP0P6 Gene

Relevant External Links for RPLP0P6 Gene

HapMap Linkage Disequilibrium report
RPLP0P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPLP0P6 Gene

Disorders for RPLP0P6 Gene

Relevant External Links for RPLP0P6

Genetic Association Database (GAD)
RPLP0P6

No disorders were found for RPLP0P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPLP0P6 Gene

Publications for RPLP0P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 67
  2. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3
  3. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3
  4. A census of human soluble protein complexes. (PMID: 22939629) Havugimana P.C. … Emili A. (Cell 2012) 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for RPLP0P6 Gene

Sources for RPLP0P6 Gene

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