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Aliases for RPLP0P2 Gene

Aliases for RPLP0P2 Gene

  • Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 2 2 3 5
  • Ribosomal Protein, Large, P0 Pseudogene 2 2 3
  • Ribosomal Protein P0 Pseudogene 2 3
  • RPLP0_3_1146 3
  • RPLP0L2 3

External Ids for RPLP0P2 Gene

Previous GeneCards Identifiers for RPLP0P2 Gene

  • GC11P063917
  • GC11P062958
  • GC11P061167
  • GC11P061157
  • GC11P061139
  • GC11P061382
  • GC11P057710

Summaries for RPLP0P2 Gene

GeneCards Summary for RPLP0P2 Gene

RPLP0P2 (Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 2) is a Pseudogene.

Additional gene information for RPLP0P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPLP0P2 Gene

Genomics for RPLP0P2 Gene

GeneHancer (GH) Regulatory Elements for RPLP0P2 Gene

Promoters and enhancers for RPLP0P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I061616 Enhancer 0.4 Ensembl 550.8 +1.7 1689 0.6 CEBPG EP300 RPLP0P2 GC11P061636
GH11I062417 Promoter/Enhancer 1.3 EPDnew ENCODE dbSUPER 6.5 +803.5 803450 1.1 L3MBTL2 SOX6 NCOA1 CBFA2T3 DPF2 ZEB2 E4F1 ZNF592 CTBP1 HDAC2 SCGB1A1 RPLP0P2 ASRGL1 INCENP LOC102723765
GH11I062419 Enhancer 1.2 Ensembl ENCODE dbSUPER 6.4 +804.9 804921 1.4 PKNOX1 INSM2 MZF1 FEZF1 ZNF366 SCRT2 ATF7 ZNF398 ZEB2 TSHZ1 ASRGL1 RPLP0P2 LOC102723765 SCGB1A1
GH11I061598 Enhancer 1.1 Ensembl ENCODE 0.4 -13.5 -13546 5.2 FOXA2 ARID4B DMAP1 ZNF48 TCF12 FOS SP5 MIER2 PPARG ZNF592 DAGLA MYRF DKFZP434K028 SDHAF2 RPLP0P2 LOC101927495
GH11I061625 Enhancer 1 Ensembl ENCODE 0.4 +12.4 12371 3.7 ARID4B NEUROD1 SIN3A ZNF48 RAD21 ELK1 ZNF143 ZNF680 ZNF654 HCFC1 DAGLA SYT7 MYRF DKFZP434K028 GC11P061636 RPLP0P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPLP0P2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPLP0P2 gene promoter:

Genomic Locations for RPLP0P2 Gene

Genomic Locations for RPLP0P2 Gene
chr11:61,615,036-61,639,449
(GRCh38/hg38)
Size:
24,414 bases
Orientation:
Plus strand
chr11:61,382,508-61,406,921
(GRCh37/hg19)

Genomic View for RPLP0P2 Gene

Genes around RPLP0P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPLP0P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPLP0P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPLP0P2 Gene

Proteins for RPLP0P2 Gene

Post-translational modifications for RPLP0P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPLP0P2 Gene

Domains & Families for RPLP0P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPLP0P2 Gene

Function for RPLP0P2 Gene

Phenotypes From GWAS Catalog for RPLP0P2 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPLP0P2 Gene

Localization for RPLP0P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPLP0P2 Gene

Pathways & Interactions for RPLP0P2 Gene

SuperPathways for RPLP0P2 Gene

No Data Available

Interacting Proteins for RPLP0P2 Gene

Gene Ontology (GO) - Biological Process for RPLP0P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPLP0P2 Gene

Drugs & Compounds for RPLP0P2 Gene

No Compound Related Data Available

Transcripts for RPLP0P2 Gene

mRNA/cDNA for RPLP0P2 Gene

(4) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPLP0P2 Gene

Ribosomal protein, large, P0 pseudogene 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP0P2 Gene

No ASD Table

Relevant External Links for RPLP0P2 Gene

GeneLoc Exon Structure for
RPLP0P2
ECgene alternative splicing isoforms for
RPLP0P2

Expression for RPLP0P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPLP0P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPLP0P2 Gene

This gene is overexpressed in Prostate (x6.0).

NURSA nuclear receptor signaling pathways regulating expression of RPLP0P2 Gene:

RPLP0P2

SOURCE GeneReport for Unigene cluster for RPLP0P2 Gene:

Hs.502733
genes like me logo Genes that share expression patterns with RPLP0P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPLP0P2 Gene

Orthologs for RPLP0P2 Gene

Evolution for RPLP0P2 Gene

ENSEMBL:
Gene Tree for RPLP0P2 (if available)
TreeFam:
Gene Tree for RPLP0P2 (if available)

No data available for Orthologs for RPLP0P2 Gene

Paralogs for RPLP0P2 Gene

No data available for Paralogs for RPLP0P2 Gene

Variants for RPLP0P2 Gene

Sequence variations from dbSNP and Humsavar for RPLP0P2 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000007876 -- 61,630,839(+) G/A intron_variant
rs1000025686 -- 61,624,266(+) A/G intron_variant
rs1000071394 -- 61,635,157(+) G/A intron_variant
rs1000102108 -- 61,635,431(+) A/G intron_variant
rs1000597273 -- 61,639,581(+) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPLP0P2 Gene

Variant ID Type Subtype PubMed ID
nsv832179 CNV loss 17160897
nsv983030 CNV duplication 23825009

Additional Variant Information for RPLP0P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPLP0P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPLP0P2 Gene

Disorders for RPLP0P2 Gene

Additional Disease Information for RPLP0P2

No disorders were found for RPLP0P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPLP0P2 Gene

Publications for RPLP0P2 Gene

  1. Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis. (PMID: 25089627) Xu G … Wang Y (PloS one 2014) 2 3 58
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  3. Low expression lncRNA RPLP0P2 is associated with poor prognosis and decreased cell proliferation and adhesion ability in lung adenocarcinoma. (PMID: 27460542) Chen J … Wang Y (Oncology reports 2016) 3 58
  4. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58
  5. Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. (PMID: 21829377) Lemaitre RN … Steffen LM (PLoS genetics 2011) 44 58

Products for RPLP0P2 Gene

Sources for RPLP0P2 Gene

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