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RPL9P24 Gene(Pseudogene)

Ribosomal Protein L9 Pseudogene 24

GCID:
GC12P101936
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RPL9P24 Gene

Subcategory (RNA class) for RPL9P24 Gene

lncRNA

Aliases for RPL9P24 Gene

  • Ribosomal Protein L9 Pseudogene 24 2 3
  • RPL9_7_1272 3
  • AC084398.1 5

External Ids for RPL9P24 Gene

ORGUL Members for RPL9P24 Gene

Previous GeneCards Identifiers for RPL9P24 Gene

  • GC12U901056
  • GC12P102330

Summaries for RPL9P24 Gene

GeneCards Summary for RPL9P24 Gene

RPL9P24 (Ribosomal Protein L9 Pseudogene 24) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL9P24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL9P24 Gene

Genomics for RPL9P24 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPL9P24 Gene

Promoters and enhancers for RPL9P24 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I101929 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.0 -1048 10.5 HDGF PKNOX1 ATF1 SMAD1 FEZF1 IRF4 GLIS2 ARID2 ZNF207 ZNF143 RPL9P24 GNPTAB WASHC3 IGF1 RNA5SP369 RNU6-101P SYCP3 DRAM1 CHPT1 GC12P101929
GH12I101941 Enhancer 0.8 ENCODE dbSUPER 0.4 +5.6 5560 1.1 ZNF687 NR2F1 BMI1 ELF1 DPF2 IRF4 ZNF217 IKZF1 ATF7 ZNF24 IGF1 RPL9P24 ENSG00000258308 DRAM1
GH12I101945 Enhancer 0.5 ENCODE 0.4 +9.4 9422 0.5 E2F1 FOXA2 FOXP2 MNT FOXA1 DRAM1 RPL9P24 ENSG00000258308
GH12I101946 Enhancer 0.4 ENCODE 0.4 +9.9 9882 0.2 FOXA2 MNT RPL9P24 ENSG00000258308 DRAM1
GH12I101942 Enhancer 0.4 ENCODE dbSUPER 0.4 +6.2 6242 0.2 IGF1 GNPTAB RPL9P24 ENSG00000258308 DRAM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL9P24 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL9P24 Gene

Genomic Locations for RPL9P24 Gene
chr12:101,936,216-101,936,674
(GRCh38/hg38)
Size:
459 bases
Orientation:
Plus strand
chr12:102,329,994-102,330,452
(GRCh37/hg19)

Genomic View for RPL9P24 Gene

Genes around RPL9P24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL9P24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL9P24 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL9P24 Gene

Proteins for RPL9P24 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL9P24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL9P24 Gene

Domains & Families for RPL9P24 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL9P24 Gene

Function for RPL9P24 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL9P24 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL9P24 Gene

Localization for RPL9P24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL9P24 Gene

Pathways & Interactions for RPL9P24 Gene

SuperPathways for RPL9P24 Gene

PathCards logo More details on SuperPathways for RPL9P24
No Data Available

Interacting Proteins for RPL9P24 Gene

Gene Ontology (GO) - Biological Process for RPL9P24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL9P24 Gene

Drugs & Compounds for RPL9P24 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL9P24 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL9P24 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL9P24 Gene

No ASD Table

Relevant External Links for RPL9P24 Gene

GeneLoc Exon Structure for
RPL9P24
ECgene alternative splicing isoforms for
RPL9P24

Expression for RPL9P24 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL9P24 Gene

mRNA expression in normal human tissues for RPL9P24 Gene
mRNA expression by GTEx for RPL9P24 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL9P24 Gene:

RPL9P24
genes like me logo Genes that share expression patterns with RPL9P24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL9P24 Gene

Orthologs for RPL9P24 Gene

Evolution for RPL9P24 Gene

ENSEMBL:
Gene Tree for RPL9P24 (if available)
TreeFam:
Gene Tree for RPL9P24 (if available)

No data available for Orthologs for RPL9P24 Gene

Paralogs for RPL9P24 Gene

No data available for Paralogs for RPL9P24 Gene

Variants for RPL9P24 Gene

Additional Variant Information for RPL9P24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL9P24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL9P24 Gene

Disorders for RPL9P24 Gene

Additional Disease Information for RPL9P24

Genetic Association Database
(GAD)

No disorders were found for RPL9P24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL9P24 Gene

Publications for RPL9P24 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H … Hirschhorn JN (Nature 2010) 44 58
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 44 58

Products for RPL9P24 Gene

Sources for RPL9P24 Gene

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