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Aliases for RPL9P17 Gene

Aliases for RPL9P17 Gene

  • Ribosomal Protein L9 Pseudogene 17 2 3
  • CTD-2290C23.1 5
  • RPL9_5_548 3

External Ids for RPL9P17 Gene

Previous GeneCards Identifiers for RPL9P17 Gene

  • GC05M031860
  • GC05M031824
  • GC05M031826

Summaries for RPL9P17 Gene

GeneCards Summary for RPL9P17 Gene

RPL9P17 (Ribosomal Protein L9 Pseudogene 17) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL9P17 Gene

Genomics for RPL9P17 Gene

Regulatory Elements for RPL9P17 Gene

Enhancers for RPL9P17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F031800 0.2 ENCODE 12.8 +22.6 22612 1.1 RPL9P17 RNU6-760P PDZD2 GC05M031821 RNU6-358P ENSG00000249688
GH05F031825 0.7 ENCODE 0.8 -2.5 -2525 0.2 GTF2F1 CTCF ZNF133 BRCA1 ZNF2 RAD21 RFX5 SCRT2 SMC3 MAFK PDZD2 RPL9P17 RNU6-760P
GH05F031826 0.2 Ensembl 0.8 -2.3 -2338 0.2 GTF2F1 CTCF ZNF133 BRCA1 ZNF2 RAD21 RFX5 SCRT2 SMC3 MAFK PDZD2 RPL9P17 RNU6-760P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL9P17 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL9P17 Gene

Chromosome:
5
Start:
31,822,460 bp from pter
End:
31,823,164 bp from pter
Size:
705 bases
Orientation:
Minus strand

Genomic View for RPL9P17 Gene

Genes around RPL9P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL9P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL9P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL9P17 Gene

Proteins for RPL9P17 Gene

Post-translational modifications for RPL9P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL9P17 Gene

Domains & Families for RPL9P17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL9P17 Gene

Function for RPL9P17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL9P17 Gene

Localization for RPL9P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL9P17 Gene

Pathways & Interactions for RPL9P17 Gene

SuperPathways for RPL9P17 Gene

No Data Available

Interacting Proteins for RPL9P17 Gene

Gene Ontology (GO) - Biological Process for RPL9P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL9P17 Gene

Transcripts for RPL9P17 Gene

mRNA/cDNA for RPL9P17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL9P17 Gene

No ASD Table

Relevant External Links for RPL9P17 Gene

GeneLoc Exon Structure for
RPL9P17
ECgene alternative splicing isoforms for
RPL9P17

Expression for RPL9P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL9P17 Gene

mRNA differential expression in normal tissues according to GTEx for RPL9P17 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x8.7), Brain - Caudate (basal ganglia) (x6.4), Brain - Nucleus accumbens (basal ganglia) (x4.3), Brain - Frontal Cortex (BA9) (x4.2), and Heart - Left Ventricle (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of RPL9P17 Gene:

RPL9P17
genes like me logo Genes that share expression patterns with RPL9P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL9P17 Gene

Orthologs for RPL9P17 Gene

Evolution for RPL9P17 Gene

ENSEMBL:
Gene Tree for RPL9P17 (if available)
TreeFam:
Gene Tree for RPL9P17 (if available)

No data available for Orthologs for RPL9P17 Gene

Paralogs for RPL9P17 Gene

No data available for Paralogs for RPL9P17 Gene

Variants for RPL9P17 Gene

Relevant External Links for RPL9P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL9P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL9P17 Gene

Disorders for RPL9P17 Gene

No disorders were found for RPL9P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL9P17 Gene

Publications for RPL9P17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL9P17 Gene

Sources for RPL9P17 Gene

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