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Aliases for RPL8P5 Gene

Subcategory (RNA class) for RPL8P5 Gene

antisense

Aliases for RPL8P5 Gene

  • Ribosomal Protein L8 Pseudogene 5 2 3
  • RPL8_2_1740 3
  • AC000078.5 5

External Ids for RPL8P5 Gene

ORGUL Members for RPL8P5 Gene

Previous GeneCards Identifiers for RPL8P5 Gene

  • GC22U900509

Summaries for RPL8P5 Gene

GeneCards Summary for RPL8P5 Gene

RPL8P5 (Ribosomal Protein L8 Pseudogene 5) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for RPL8P5 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPL8P5

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPL8P5 Gene

Genomics for RPL8P5 Gene

Regulatory Elements for RPL8P5 Gene

Enhancers for RPL8P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G020078 2 FANTOM5 Ensembl ENCODE dbSUPER 22.9 +194.2 194233 5.2 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC DGCR8 RPL8P5 TRMT2A RANBP1 ENSG00000243762 ENSG00000273300 SCARF2 MIR185 ZDHHC8 TBX1
GH22G019947 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.2 +63.4 63435 7.3 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX AGO1 WRNIP1 ZFP64 SIN3A ARID4B DGCR8 ENSG00000273300 RPL7AP70 RPL8P5 DGCR11 TXNRD2 MIR185 COMT TBX1 ARVCF
GH22G020494 1.8 FANTOM5 ENCODE dbSUPER 20.9 +608.6 608555 2.7 CREB3L1 FEZF1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 SP3 DGCR8 LOC100420177 RPL7AP70 THAP7 ENSG00000273343 THAP7-AS1 RPL8P5 TUBA3FP SCARF2 ABHD17AP4
GH22G019874 2 FANTOM5 Ensembl ENCODE dbSUPER 15 -8.4 -8372 9.7 PKNOX1 FOXA2 AGO1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 FOS TXNRD2 RPL8P5 ENSG00000273343 LINC01311 LOC100420177 GNB1L RTL10 DGCR6L COMT ZDHHC8
GH22G019884 1.9 FANTOM5 Ensembl ENCODE dbSUPER 14.8 -0.6 -640 5.1 ATF1 PKNOX1 AGO1 FEZF1 ZNF2 ZNF766 GLIS2 GATA2 KLF7 FOS TXNRD2 LINC01311 LOC100420177 RPL8P5 DGCR8 GNB1L RTL10 COMT TRMT2A GC22M019875
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL8P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL8P5 Gene

Chromosome:
22
Start:
19,887,289 bp from pter
End:
19,887,970 bp from pter
Size:
682 bases
Orientation:
Plus strand

Genomic View for RPL8P5 Gene

Genes around RPL8P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL8P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL8P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL8P5 Gene

ORGUL Member Location for RPL8P5 Gene

ORGUL Member Location for RPL8P5 gene

Proteins for RPL8P5 Gene

Post-translational modifications for RPL8P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL8P5 Gene

Domains & Families for RPL8P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL8P5 Gene

Function for RPL8P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL8P5 Gene

Localization for RPL8P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL8P5 Gene

Pathways & Interactions for RPL8P5 Gene

SuperPathways for RPL8P5 Gene

No Data Available

Interacting Proteins for RPL8P5 Gene

Gene Ontology (GO) - Biological Process for RPL8P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL8P5 Gene

Drugs & Compounds for RPL8P5 Gene

No Compound Related Data Available

Transcripts for RPL8P5 Gene

fRNAdb Secondary structures for RPL8P5 Gene

  • FR359900

mRNA/cDNA for RPL8P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL8P5 Gene

No ASD Table

Relevant External Links for RPL8P5 Gene

GeneLoc Exon Structure for
RPL8P5
ECgene alternative splicing isoforms for
RPL8P5

Expression for RPL8P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL8P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPL8P5 Gene

This gene is overexpressed in Muscle - Skeletal (x4.6) and Brain - Cerebellum (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPL8P5 Gene:

RPL8P5
genes like me logo Genes that share expression patterns with RPL8P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL8P5 Gene

Orthologs for RPL8P5 Gene

Evolution for RPL8P5 Gene

ENSEMBL:
Gene Tree for RPL8P5 (if available)
TreeFam:
Gene Tree for RPL8P5 (if available)

No data available for Orthologs for RPL8P5 Gene

Paralogs for RPL8P5 Gene

No data available for Paralogs for RPL8P5 Gene

Variants for RPL8P5 Gene

Relevant External Links for RPL8P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL8P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL8P5 Gene

Disorders for RPL8P5 Gene

No disorders were found for RPL8P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL8P5 Gene

Publications for RPL8P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for RPL8P5 Gene

Sources for RPL8P5 Gene

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