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Aliases for RPL7 Gene

Aliases for RPL7 Gene

  • Ribosomal Protein L7 2 3 5
  • Large Ribosomal Subunit Protein UL30 3 4
  • 60S Ribosomal Protein L7 3
  • HumL7-1 3
  • L7 3

External Ids for RPL7 Gene

Previous GeneCards Identifiers for RPL7 Gene

  • GC08M073255
  • GC08M074143
  • GC08M073920
  • GC08M074252
  • GC08M074365
  • GC08M074202
  • GC08M069693

Summaries for RPL7 Gene

Entrez Gene Summary for RPL7 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L30P family of ribosomal proteins. It contains an N-terminal basic region-leucine zipper (BZIP)-like domain and the RNP consensus submotif RNP2. In vitro the BZIP-like domain mediates homodimerization and stable binding to DNA and RNA, with a preference for 28S rRNA and mRNA. The protein can inhibit cell-free translation of mRNAs, suggesting that it plays a regulatory role in the translation apparatus. It is located in the cytoplasm. The protein has been shown to be an autoantigen in patients with systemic autoimmune diseases, such as systemic lupus erythematosus. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL7 Gene

RPL7 (Ribosomal Protein L7) is a Protein Coding gene. Diseases associated with RPL7 include Systemic Lupus Erythematosus and Collagen Disease. Among its related pathways are Viral mRNA Translation and Metabolism. GO annotations related to this gene include poly(A) RNA binding and RNA binding. An important paralog of this gene is RPL7L1.

UniProtKB/Swiss-Prot for RPL7 Gene

  • Component of the large ribosomal subunit (PubMed:12962325). Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Gene Wiki entry for RPL7 Gene

Additional gene information for RPL7 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL7 Gene

Genomics for RPL7 Gene

Regulatory Elements for RPL7 Gene

Enhancers for RPL7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H073291 1.4 ENCODE dbSUPER 15.5 +1.0 1026 5 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 RPL7 RDH10-AS1 RDH10
GH08H073975 1 ENCODE 21.4 -680.7 -680658 2 PKNOX1 ATF1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 TMEM70 RPL7 ENSG00000253341 ENSG00000272254 UBE2W GC08M073979
GH08H073007 1.3 ENCODE dbSUPER 10.2 +286.7 286725 2 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF2 YY1 GTF3C2 GLIS2 ENSG00000253636 ENSG00000272254 RPL7 TERF1 RNU6-285P
GH08H073504 1.2 Ensembl ENCODE dbSUPER 10.4 -208.8 -208812 0 CTCF ZNF654 GTF2E2 TRIM22 ZNF384 REST RAD21 CC2D1A FOXK2 ZSCAN5C RDH10 RPL7 ENSG00000254273 GC08M073453
GH08H073970 1.1 ENCODE 10.8 -676.1 -676132 3 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 TMEM70 RPL7 GC08M073941 GC08P073966
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL7 on UCSC Golden Path with GeneCards custom track

Promoters for RPL7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000225860 1089 4201 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207

Genomic Location for RPL7 Gene

Chromosome:
8
Start:
73,290,267 bp from pter
End:
73,295,789 bp from pter
Size:
5,523 bases
Orientation:
Minus strand

Genomic View for RPL7 Gene

Genes around RPL7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL7 Gene

Proteins for RPL7 Gene

  • Protein details for RPL7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P18124-RL7_HUMAN
    Recommended name:
    60S ribosomal protein L7
    Protein Accession:
    P18124
    Secondary Accessions:
    • A8K504
    • Q15289
    • Q3KQU0
    • Q5I0X1
    • Q6IBM9

    Protein attributes for RPL7 Gene

    Size:
    248 amino acids
    Molecular mass:
    29226 Da
    Quaternary structure:
    • Component of the large ribosomal subunit (Probable). Homodimer.
    SequenceCaution:
    • Sequence=CAA41026.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RPL7 Gene

neXtProt entry for RPL7 Gene

Post-translational modifications for RPL7 Gene

  • Ubiquitination at isoforms=40, Lys77, Lys88, isoforms=107, Lys124, isoforms=127, isoforms=148, Lys181, Lys199, Lys202, isoforms=212, and isoforms=223
  • Modification sites at PhosphoSitePlus

Other Protein References for RPL7 Gene

No data available for DME Specific Peptides for RPL7 Gene

Domains & Families for RPL7 Gene

Gene Families for RPL7 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Ribosomal proteins

Suggested Antigen Peptide Sequences for RPL7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P18124

UniProtKB/Swiss-Prot:

RL7_HUMAN :
  • Belongs to the universal ribosomal protein uL30 family.
Family:
  • Belongs to the universal ribosomal protein uL30 family.
genes like me logo Genes that share domains with RPL7: view

Function for RPL7 Gene

Molecular function for RPL7 Gene

GENATLAS Biochemistry:
60S ribosomal protein L7
UniProtKB/Swiss-Prot Function:
Component of the large ribosomal subunit (PubMed:12962325). Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Gene Ontology (GO) - Molecular Function for RPL7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IDA 8441630
GO:0003723 RNA binding IDA,TAS 22658674
GO:0003729 mRNA binding IDA 8441630
GO:0003735 structural constituent of ribosome NAS,TAS 12962325
GO:0005515 protein binding IPI 18274552
genes like me logo Genes that share ontologies with RPL7: view
genes like me logo Genes that share phenotypes with RPL7: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RPL7
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL7 Gene

Localization for RPL7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPL7 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 5

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Endoplasmic reticulum (2)
  • Nucleoli (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RPL7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005730 nucleolus IDA 16791210
GO:0005737 cytoplasm IDA 16791210
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with RPL7: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL7 Gene

Pathways & Interactions for RPL7 Gene

genes like me logo Genes that share pathways with RPL7: view

Pathways by source for RPL7 Gene

1 KEGG pathway for RPL7 Gene
1 GeneGo (Thomson Reuters) pathway for RPL7 Gene

Gene Ontology (GO) - Biological Process for RPL7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA --
GO:0002181 cytoplasmic translation IBA --
GO:0006364 rRNA processing TAS --
GO:0006412 translation NAS,TAS 12962325
genes like me logo Genes that share ontologies with RPL7: view

No data available for SIGNOR curated interactions for RPL7 Gene

Drugs & Compounds for RPL7 Gene

(1) Additional Compounds for RPL7 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RPL7: view

Transcripts for RPL7 Gene

Unigene Clusters for RPL7 Gene

Ribosomal protein L7:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for RPL7
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL7 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b ^ 10
SP1: - - - -
SP2: - - - - - - - -
SP3: -
SP4:
SP5: - - -
SP6:
SP7:

Relevant External Links for RPL7 Gene

GeneLoc Exon Structure for
RPL7
ECgene alternative splicing isoforms for
RPL7

Expression for RPL7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL7 Gene

Protein differential expression in normal tissues from HIPED for RPL7 Gene

This gene is overexpressed in Nasal epithelium (17.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RPL7 Gene



Protein tissue co-expression partners for RPL7 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL7 Gene:

RPL7

SOURCE GeneReport for Unigene cluster for RPL7 Gene:

Hs.421257

Evidence on tissue expression from TISSUES for RPL7 Gene

  • Liver(4.9)
  • Lung(4.9)
  • Skin(4.9)
  • Eye(4.8)
  • Muscle(4.8)
  • Pancreas(4.7)
  • Nervous system(4.6)
  • Bone marrow(4.4)
  • Blood(4.2)
  • Intestine(4)
  • Kidney(4)
  • Bone(3.9)
  • Heart(3.4)
  • Stomach(3.4)
  • Spleen(2.6)
  • Lymph node(2.2)
  • Adrenal gland(2.1)
  • Thyroid gland(2.1)
genes like me logo Genes that share expression patterns with RPL7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL7 Gene

Orthologs for RPL7 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL7 33
  • 99.73 (n)
cow
(Bos Taurus)
Mammalia -- 34
  • 94 (a)
OneToMany
RPL7 33 34
  • 92.74 (n)
-- 34
  • 88 (a)
OneToMany
dog
(Canis familiaris)
Mammalia RPL7 33 34
  • 91.53 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RPL7 34
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 90 (a)
OneToMany
-- 34
  • 85 (a)
OneToMany
-- 34
  • 75 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rpl7 33
  • 89.39 (n)
mouse
(Mus musculus)
Mammalia Rpl7 33 16 34
  • 87.8 (n)
chicken
(Gallus gallus)
Aves RPL7 33 34
  • 76.19 (n)
lizard
(Anolis carolinensis)
Reptilia RPL7 34
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl7 33
  • 75.61 (n)
zebrafish
(Danio rerio)
Actinopterygii rpl7 33 34
  • 73.8 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008916 33
  • 57.18 (n)
fruit fly
(Drosophila melanogaster)
Insecta RpL7 35 33 34
  • 56.49 (n)
CG5317 35
  • 35 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-7 35 33 34
  • 57.46 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D03410g 33
  • 56.57 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL082W 33
  • 55.18 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL7A 33 34
  • 54.61 (n)
RPL7B 34
  • 51 (a)
ManyToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G13580 33
  • 60.73 (n)
soybean
(Glycine max)
eudicotyledons Gma.973 33
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.1884 33
rice
(Oryza sativa)
Liliopsida Os08g0234000 33
  • 61.84 (n)
Os.4880 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2360 34
  • 60 (a)
OneToMany
bread mold
(Neurospora crassa)
Ascomycetes NCU07829 33
  • 58.44 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl702 33
  • 57.38 (n)
Species where no ortholog for RPL7 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL7 Gene

ENSEMBL:
Gene Tree for RPL7 (if available)
TreeFam:
Gene Tree for RPL7 (if available)

Paralogs for RPL7 Gene

Paralogs for RPL7 Gene

(2) SIMAP similar genes for RPL7 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RPL7: view

Variants for RPL7 Gene

Sequence variations from dbSNP and Humsavar for RPL7 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000559104 -- 73,294,552(+) GGCGC(C/G)GGCTC upstream-variant-2KB
rs1000876795 -- 73,294,659(+) GTGCC(C/G)GAGTG upstream-variant-2KB, utr-variant-5-prime
rs1000935960 -- 73,290,255(+) AAAAG(A/G)AAAAC downstream-variant-500B
rs1001045157 -- 73,294,540(+) GATGC(C/G)GAGGC upstream-variant-2KB
rs1001351954 -- 73,294,322(+) CCGGG(A/G)CTCTG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for RPL7 Gene

Variant ID Type Subtype PubMed ID
esv2737154 CNV deletion 23290073
nsv971665 CNV duplication 23825009

Variation tolerance for RPL7 Gene

Residual Variation Intolerance Score: 34.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.45; 9.90% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPL7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL7 Gene

Disorders for RPL7 Gene

MalaCards: The human disease database

(3) MalaCards diseases for RPL7 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
systemic lupus erythematosus
  • lupus nephritis
collagen disease
  • collagen disorder
retinitis pigmentosa 22
  • rp22
- elite association - COSMIC cancer census association via MalaCards
Search RPL7 in MalaCards View complete list of genes associated with diseases

Relevant External Links for RPL7

Genetic Association Database (GAD)
RPL7
Human Genome Epidemiology (HuGE) Navigator
RPL7
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL7
genes like me logo Genes that share disorders with RPL7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RPL7 Gene

Publications for RPL7 Gene

  1. Structural and functional properties of ribosomal protein L7 from humans and rodents. (PMID: 8441630) Hemmerich P … Krawinkel U (Nucleic acids research 1993) 2 3 4 22 60
  2. Human ribosomal protein L7 inhibits cell-free translation in reticulocyte lysates and affects the expression of nuclear proteins upon stable transfection into Jurkat T-lymphoma cells. (PMID: 7862521) Neumann F … Krawinkel U (Nucleic acids research 1995) 3 4 22 60
  3. Identification of a transcript that is down-regulated in senescent human fibroblasts. Cloning, sequence analysis, and regulation of the human L7 ribosomal protein gene. (PMID: 8360149) Seshadri T … Campisi J (The Journal of biological chemistry 1993) 2 3 4 60
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  5. Human ribosomal protein L7 displays an ER binding property and is involved in ribosome-ER association. (PMID: 17258209) Wu WC … Lin A (FEBS letters 2007) 3 22 60

Products for RPL7 Gene

Sources for RPL7 Gene

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