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Aliases for RPL6P17 Gene

Aliases for RPL6P17 Gene

  • Ribosomal Protein L6 Pseudogene 17 2 3
  • RP1-190J20.2 5
  • RPL6_4_660 3

External Ids for RPL6P17 Gene

Previous GeneCards Identifiers for RPL6P17 Gene

  • GC06M015213

Summaries for RPL6P17 Gene

GeneCards Summary for RPL6P17 Gene

RPL6P17 (Ribosomal Protein L6 Pseudogene 17) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL6P17 Gene

Genomics for RPL6P17 Gene

Regulatory Elements for RPL6P17 Gene

Enhancers for RPL6P17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G015086 1.6 Ensembl ENCODE dbSUPER 12.5 +15.2 15185 5.8 HDGF PKNOX1 CREB3L1 ARNT SIN3A YY1 ZNF766 FOS KLF13 ZHX2 RPL6P17 JARID2 ENSG00000271888 DTNBP1 ENSG00000234261 GC06M015081
GH06G015096 1.5 FANTOM5 ENCODE dbSUPER 12.9 +6.8 6762 1.2 HDGF ATF1 PKNOX1 ZNF766 GATA2 KLF13 CAVIN1 ZNF592 MBD2 CREB3 RPL6P17 ENSG00000234261
GH06G015148 1.7 FANTOM5 Ensembl ENCODE dbSUPER 8.8 -44.4 -44375 1.0 ZNF76 INSM2 KLF17 FEZF1 ZNF335 GLIS2 ZNF366 FOS JUNB REST RPL6P17 JARID2 LOC105374946 RN7SL332P
GH06G015079 1.3 ENCODE dbSUPER 10.9 +24.5 24490 0.8 HNRNPUL1 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 CAVIN1 NCOA1 ZNF592 RPL6P17 GC06M015081 LOC105374945
GH06G015080 0.8 dbSUPER 11.2 +23.1 23073 1.6 HDGF HDAC1 CBX3 TAL1 CCNT2 ZNF766 POLR2A GATA2 NCOR1 NR2F6 RPL6P17 DTNBP1 GC06M015081 LOC105374945
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL6P17 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL6P17 Gene

Chromosome:
6
Start:
15,102,946 bp from pter
End:
15,104,211 bp from pter
Size:
1,266 bases
Orientation:
Minus strand

Genomic View for RPL6P17 Gene

Genes around RPL6P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL6P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL6P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL6P17 Gene

Proteins for RPL6P17 Gene

Post-translational modifications for RPL6P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL6P17 Gene

Domains & Families for RPL6P17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL6P17 Gene

Function for RPL6P17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL6P17 Gene

Localization for RPL6P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL6P17 Gene

Pathways & Interactions for RPL6P17 Gene

SuperPathways for RPL6P17 Gene

No Data Available

Interacting Proteins for RPL6P17 Gene

Gene Ontology (GO) - Biological Process for RPL6P17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL6P17 Gene

Drugs & Compounds for RPL6P17 Gene

No Compound Related Data Available

Transcripts for RPL6P17 Gene

mRNA/cDNA for RPL6P17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL6P17 Gene

No ASD Table

Relevant External Links for RPL6P17 Gene

GeneLoc Exon Structure for
RPL6P17
ECgene alternative splicing isoforms for
RPL6P17

Expression for RPL6P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL6P17 Gene

mRNA differential expression in normal tissues according to GTEx for RPL6P17 Gene

This gene is overexpressed in Testis (x42.5), Skin - Sun Exposed (Lower leg) (x5.3), and Skin - Not Sun Exposed (Suprapubic) (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of RPL6P17 Gene:

RPL6P17
genes like me logo Genes that share expression patterns with RPL6P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL6P17 Gene

Orthologs for RPL6P17 Gene

Evolution for RPL6P17 Gene

ENSEMBL:
Gene Tree for RPL6P17 (if available)
TreeFam:
Gene Tree for RPL6P17 (if available)

No data available for Orthologs for RPL6P17 Gene

Paralogs for RPL6P17 Gene

No data available for Paralogs for RPL6P17 Gene

Variants for RPL6P17 Gene

Relevant External Links for RPL6P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL6P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL6P17 Gene

Disorders for RPL6P17 Gene

No disorders were found for RPL6P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL6P17 Gene

Publications for RPL6P17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL6P17 Gene

Sources for RPL6P17 Gene

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