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Aliases for RPL5P4 Gene

Aliases for RPL5P4 Gene

  • Ribosomal Protein L5 Pseudogene 4 2 3 5
  • RPL5_1_31 3

External Ids for RPL5P4 Gene

Previous GeneCards Identifiers for RPL5P4 Gene

  • GC01U902379
  • GC01P035817

Summaries for RPL5P4 Gene

GeneCards Summary for RPL5P4 Gene

RPL5P4 (Ribosomal Protein L5 Pseudogene 4) is a Pseudogene.

Additional gene information for RPL5P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P4 Gene

Genomics for RPL5P4 Gene

GeneHancer (GH) Regulatory Elements for RPL5P4 Gene

Promoters and enhancers for RPL5P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I036154 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 61.2 +806.0 806019 4.5 PKNOX1 SMAD1 ARID4B SIN3A ZNF2 ZBTB7B POLR2B ZNF213 ZNF143 ZNF548 MAP7D1 TRAPPC3 SFPQ ZMYM4 AGO3 RPL5P4 THRAP3 COL8A2 EVA1B LOC105378647
GH01I035189 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 23.5 -158.9 -158939 5 HDGF HNRNPUL1 PKNOX1 CLOCK FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 SFPQ ZMYM1 LOC653160 ENSG00000230163 ZMYM6 LOC105378647 RPL5P4 AGO4 TMEM35B COL8A2
GH01I036266 Enhancer 0.9 dbSUPER 53 +916.0 915992 0.8 ZNF493 ZNF529 ZFP64 MZF1 ZEB1 ZNF121 ZNF23 ZNF213 ZNF302 ZNF354C ZMYM4 AGO3 RPL5P4 THRAP3 COL8A2 EVA1B LOC105378647 TRAPPC3 AGO4 UBE2V2P4
GH01I035856 Enhancer 0.8 dbSUPER 50.9 +506.8 506771 2 PKNOX1 ZNF493 ZNF529 ZFP64 RAD21 ZNF213 ZNF354C ZNF202 ZNF680 ZBTB11 GC01P035856 SFPQ ZMYM1 ZMYM6 ZMYM4 LOC653160 AGO3 RPL5P4 THRAP3 COL8A2
GH01I035717 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 13.4 +367.9 367929 2 HDGF ARNT SIN3A YY1 ZNF207 SP3 REST SMARCB1 ZNF592 SMARCA4 C1orf216 ZMYM1 ENSG00000230163 LOC653160 SFPQ ZMYM6 LOC105378647 EVA1B RPL5P4 THRAP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL5P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL5P4 Gene

Genomic Locations for RPL5P4 Gene
chr1:35,350,648-35,351,666
(GRCh38/hg38)
Size:
1,019 bases
Orientation:
Plus strand
chr1:35,816,249-35,817,267
(GRCh37/hg19)

Genomic View for RPL5P4 Gene

Genes around RPL5P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P4 Gene

Proteins for RPL5P4 Gene

Post-translational modifications for RPL5P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P4 Gene

Domains & Families for RPL5P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P4 Gene

Function for RPL5P4 Gene

Phenotypes From GWAS Catalog for RPL5P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P4 Gene

Localization for RPL5P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P4 Gene

Pathways & Interactions for RPL5P4 Gene

SuperPathways for RPL5P4 Gene

No Data Available

Interacting Proteins for RPL5P4 Gene

Gene Ontology (GO) - Biological Process for RPL5P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P4 Gene

Drugs & Compounds for RPL5P4 Gene

No Compound Related Data Available

Transcripts for RPL5P4 Gene

mRNA/cDNA for RPL5P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P4 Gene

No ASD Table

Relevant External Links for RPL5P4 Gene

GeneLoc Exon Structure for
RPL5P4
ECgene alternative splicing isoforms for
RPL5P4

Expression for RPL5P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL5P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL5P4 Gene:

RPL5P4
genes like me logo Genes that share expression patterns with RPL5P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P4 Gene

Orthologs for RPL5P4 Gene

Evolution for RPL5P4 Gene

ENSEMBL:
Gene Tree for RPL5P4 (if available)
TreeFam:
Gene Tree for RPL5P4 (if available)

No data available for Orthologs for RPL5P4 Gene

Paralogs for RPL5P4 Gene

No data available for Paralogs for RPL5P4 Gene

Variants for RPL5P4 Gene

Additional Variant Information for RPL5P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P4 Gene

Disorders for RPL5P4 Gene

No disorders were found for RPL5P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL5P4 Gene

Publications for RPL5P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL5P4 Gene

Sources for RPL5P4 Gene

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